RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TREM1Q9NP99 234 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 TECRQ9NZ01 308 aaKnown RBP10.66□□□□□ -0.7
LDLR-213ENST00000560502 RNF24Q9Y225 148 aa10.66□□□□□ -0.7
LDLR-213ENST00000560502 TMEM218A2RU14 115 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 OR2J3O76001 311 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 HSPB1P04792 205 aaKnown RBP10.65□□□□□ -0.7
LDLR-213ENST00000560502 BCL2P10415 239 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 RHOGP84095 191 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 SSX7Q7RTT5 188 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 Q8N1Y9 231 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 STXBP6Q8NFX7 210 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 SUN5Q8TC36 379 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 EEF1AKMT3Q96AZ1 226 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 USMG5Q96IX5 58 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 SCRT1Q9BWW7 348 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 EIF5A2Q9GZV4 153 aaKnown RBP10.65□□□□□ -0.7
LDLR-213ENST00000560502 VAX2Q9UIW0 290 aa10.65□□□□□ -0.7
LDLR-213ENST00000560502 LOC102723971A0A1B0GUV8 181 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 A8MZ25 164 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 HYPMO75409 117 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 NDUFB8O95169 186 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 IGKV1-17P01599 117 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 IGHV3-48P01763 117 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 RD3LP0DJH9 198 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 ZNF90Q03938 601 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 C15orf32Q32M92 178 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 Q56UQ5 140 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 GCSAMLQ5JQS6 135 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 FAM78BQ5VT40 261 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 C10orf113Q5VZT2 155 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 OR51G1Q8NGK1 321 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 ZNF502Q8TBZ5 544 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 TMEM190Q8WZ59 177 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 NARS2Q96I59 477 aaKnown RBP10.64□□□□□ -0.71
LDLR-213ENST00000560502 SEC11CQ9BY50 192 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 TMEM167BQ9NRX6 74 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 C19orf73Q9NVV2 129 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 GNG13Q9P2W3 67 aa10.64□□□□□ -0.71
LDLR-213ENST00000560502 NUPL2O15504 423 aaKnown RBP10.63□□□□□ -0.71
LDLR-213ENST00000560502 OR2C1O95371 312 aa10.63□□□□□ -0.71
LDLR-213ENST00000560502 IGLV1-51P01701 117 aa10.63□□□□□ -0.71
LDLR-213ENST00000560502 IGHV3-11P01762 117 aa10.63□□□□□ -0.71
LDLR-213ENST00000560502 C8orf88P0DMB2 117 aa10.63□□□□□ -0.71
LDLR-213ENST00000560502 IGHV4-30-4P0DP06 118 aa10.63□□□□□ -0.71
LDLR-213ENST00000560502 CCL20P78556 96 aa10.63□□□□□ -0.71
LDLR-213ENST00000560502 ZFAND6Q6FIF0 208 aa10.63□□□□□ -0.71
LDLR-213ENST00000560502 SLC35B3Q9H1N7 401 aa10.63□□□□□ -0.71
LDLR-213ENST00000560502 SEPSECSQ9HD40 501 aaKnown RBP10.63□□□□□ -0.71
LDLR-213ENST00000560502 ZNF355PQ9NSJ1 428 aa10.63□□□□□ -0.71
LDLR-213ENST00000560502 CARHSP1Q9Y2V2 147 aaKnown RBP10.63□□□□□ -0.71
LDLR-213ENST00000560502 IGHV3-21A0A0B4J1V1 117 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 A0A0G2JLM5 398 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 A0A1B0GV50 99 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 F8W735 103 aaPredicted RBP10.62□□□□□ -0.71
LDLR-213ENST00000560502 ARL14EPLP0DKL9 152 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 PSG1P11464 419 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 FGF8P55075 233 aaPredicted RBP10.62□□□□□ -0.71
LDLR-213ENST00000560502 ATP5G2Q06055 141 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 ICAM4Q14773 271 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 TIGITQ495A1 244 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 C10orf91Q5T1B1 145 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 Q8WTZ3 238 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 TMEM37Q8WXS4 190 aa10.62□□□□□ -0.71
LDLR-213ENST00000560502 TRGV3P03979 118 aa10.61□□□□□ -0.71
LDLR-213ENST00000560502 SFTA3P0C7M3 94 aa10.61□□□□□ -0.71
LDLR-213ENST00000560502 GATA2P23769 480 aaPredicted RBP10.61□□□□□ -0.71
LDLR-213ENST00000560502 GCHFRP30047 84 aa10.61□□□□□ -0.71
LDLR-213ENST00000560502 TPPP2P59282 170 aa10.61□□□□□ -0.71
LDLR-213ENST00000560502 MEF2BQ02080 365 aaPredicted RBP10.61□□□□□ -0.71
LDLR-213ENST00000560502 HAGHQ16775 308 aa10.61□□□□□ -0.71
LDLR-213ENST00000560502 ZNF600Q6ZNG1 722 aa10.61□□□□□ -0.71
LDLR-213ENST00000560502 LINC00052Q96N35 136 aa10.61□□□□□ -0.71
LDLR-213ENST00000560502 MS4A10Q96PG2 267 aa10.61□□□□□ -0.71
LDLR-213ENST00000560502 HIGD1AQ9Y241 93 aa10.61□□□□□ -0.71
LDLR-213ENST00000560502 TMEM250H0YL14 139 aa10.6□□□□□ -0.71
LDLR-213ENST00000560502 SRSF3P84103 164 aaKnown RBP10.6□□□□□ -0.71
LDLR-213ENST00000560502 RELQ04864 619 aaPredicted RBP10.6□□□□□ -0.71
LDLR-213ENST00000560502 MIR17HGQ75NE6 70 aa10.6□□□□□ -0.71
LDLR-213ENST00000560502 OR1B1Q8NGR6 318 aa10.6□□□□□ -0.71
LDLR-213ENST00000560502 RNF125Q96EQ8 232 aa10.6□□□□□ -0.71
LDLR-213ENST00000560502 ELOVL1Q9BW60 279 aa10.6□□□□□ -0.71
LDLR-213ENST00000560502 TMEM231Q9H6L2 316 aa10.6□□□□□ -0.71
LDLR-213ENST00000560502 F8W036 122 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 BMPR1BO00238 502 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 HMGB3O15347 200 aaKnown RBP10.59□□□□□ -0.71
LDLR-213ENST00000560502 PDE6DO43924 150 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 OR7C2O60412 319 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 CTSGP08311 255 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 ORM2P19652 201 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 LYZP61626 148 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 PATE2Q6UY27 113 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 LINC00305Q7Z4B0 112 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 IQCF2Q8IXL9 164 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 SVBPQ8N300 66 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 CCDC140Q96MF4 163 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 TCEAL7Q9BRU2 100 aa10.59□□□□□ -0.71
LDLR-213ENST00000560502 NKX6-2Q9C056 277 aaPredicted RBP10.59□□□□□ -0.71
LDLR-213ENST00000560502 MRPL27Q9P0M9 148 aaKnown RBP10.59□□□□□ -0.71
LDLR-213ENST00000560502 HYDINQ4G0P3 5121 aa10.58□□□□□ -0.72
LDLR-213ENST00000560502 OR2T8A6NH00 312 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms