RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 OR11H7Q8NGC8 314 aa6.47□□□□□ -1.37
HDDC3-204ENST00000559834 C20orf173Q96LM9 149 aa6.47□□□□□ -1.37
HDDC3-204ENST00000559834 SLC25A32Q9H2D1 315 aa6.47□□□□□ -1.37
HDDC3-204ENST00000559834 PPP1R14DQ9NXH3 145 aa6.47□□□□□ -1.37
HDDC3-204ENST00000559834 IGKV1OR2-108A0A075B7D4 117 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 NBDYA0A0U1RRE5 68 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 CBY3A6NI87 242 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 SYNGR2O43760 224 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 NUDT3O95989 172 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 ATP5G1P05496 136 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 IAPPP10997 89 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 ATP5G3P48201 142 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 CNN1P51911 297 aaKnown RBP6.46□□□□□ -1.38
HDDC3-204ENST00000559834 FGL1Q08830 312 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 ZNF846Q147U1 533 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 SPINK13Q1W4C9 94 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 TMEM128Q5BJH2 165 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 TMEM256Q8N2U0 113 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 C6orf223Q8N319 242 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 DYNC2LI1Q8TCX1 351 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 LINC01587Q99440 93 aa6.46□□□□□ -1.38
HDDC3-204ENST00000559834 FABP12A6NFH5 140 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 M0R2Z0 102 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 WRBO00258 174 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 CRXO43186 299 aaPredicted RBP6.45□□□□□ -1.38
HDDC3-204ENST00000559834 CDK2AP2O75956 126 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 RPL7P18124 248 aaKnown RBP6.45□□□□□ -1.38
HDDC3-204ENST00000559834 AP3S2P59780 193 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 RAP2BP61225 183 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 RHOBP62745 196 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 AKR1C1Q04828 323 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 TNP2Q05952 138 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 CLINT1Q14677 625 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 Q6ZNX1 250 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 TMED4Q7Z7H5 227 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 LRTM2Q8N967 370 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 ZNF738Q8NE65 137 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 ZNRF2Q8NHG8 242 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 LRRC20Q8TCA0 184 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 CCDC59Q9P031 241 aaKnown RBP6.45□□□□□ -1.38
HDDC3-204ENST00000559834 RNF24Q9Y225 148 aa6.45□□□□□ -1.38
HDDC3-204ENST00000559834 DNAH6Q9C0G6 4158 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 HYPMO75409 117 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 PRM2P04554 102 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 IL5P05113 134 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 HTN1P15515 57 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 VAMP1P23763 118 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 GATA2P23769 480 aaPredicted RBP6.44□□□□□ -1.38
HDDC3-204ENST00000559834 TAS2R60P59551 318 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 SPANXN5Q5MJ07 72 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 ZNF493Q6ZR52 646 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 TMEM144Q7Z5S9 345 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 S100ZQ8WXG8 99 aa6.44□□□□□ -1.38
HDDC3-204ENST00000559834 SLC25A21Q9BQT8 299 aaPredicted RBP6.44□□□□□ -1.38
HDDC3-204ENST00000559834 SLC25A39Q9BZJ4 359 aaPredicted RBP6.44□□□□□ -1.38
HDDC3-204ENST00000559834 STRAPQ9Y3F4 350 aaKnown RBP6.44□□□□□ -1.38
HDDC3-204ENST00000559834 TIMM8BQ9Y5J9 83 aaPredicted RBP6.44□□□□□ -1.38
HDDC3-204ENST00000559834 NACAE9PAV3 2078 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 TRAV12-2A0A075B6T6 113 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 TRAV8-2A0A0B4J237 113 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 PRSS46E5RG02 174 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 BOLA2-SMG1P6H3BVE0 249 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 PFDN1O60925 122 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 ADAP1O75689 374 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 SFT2D2O95562 160 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 OR5G3P0C626 314 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 AZU1P20160 251 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 TNFSF8P32971 234 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 SELENOTP62341 195 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 HIST1H1AQ02539 215 aaPredicted RBP6.43□□□□□ -1.38
HDDC3-204ENST00000559834 FCN2Q15485 313 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 PSG3Q16557 428 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 IGFL4Q6B9Z1 124 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 TMEM182Q6ZP80 229 aaPredicted RBP6.43□□□□□ -1.38
HDDC3-204ENST00000559834 LINC00299Q6ZSB3 139 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 CYP2G1PQ6ZSU1 146 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 BAP18Q8IXM2 172 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 TOMM5Q8N4H5 51 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 RNF182Q8N6D2 247 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 OR8A1Q8NGG7 326 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 OR10J6PQ8NGY7 276 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 C16orf74Q96GX8 76 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 C17orf77Q96MU5 243 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 SOSTQ9BQB4 213 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 SHANK2-AS3Q9BTD1 123 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 KRTAP4-5Q9BYR2 181 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 SLIRPQ9GZT3 109 aaKnown RBP6.43□□□□□ -1.38
HDDC3-204ENST00000559834 HIGD1AQ9Y241 93 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 HECTD4Q9Y4D8 3996 aa6.43□□□□□ -1.38
HDDC3-204ENST00000559834 SMCO3A2RU48 225 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 H3BRN7 92 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 HOXB5P09067 269 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 CXCL3P19876 107 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 ANXA7P20073 488 aaKnown RBP6.42□□□□□ -1.38
HDDC3-204ENST00000559834 CDKN1BP46527 198 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 PLP1P60201 277 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 ACOT7LQ6ZUV0 252 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 SSX7Q7RTT5 188 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 MAPKAPK5-AS1Q8N8E1 139 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms