RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 OR4C13Q8NGP0 309 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 NDUFA4L2Q9NRX3 87 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 IGHV1-46P01743 117 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 CT45A10P0DMU9 189 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 KIR3DS1Q14943 382 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 FAM120AOSQ5T036 256 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 C22orf34Q6ZV56 151 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 OR10AG1Q8NH19 301 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 DEFB104AQ8WTQ1 72 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 FBXL15Q9H469 300 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 RALYQ9UKM9 306 aaKnown RBP9.09□□□□□ -0.95
LDLR-208ENST00000558518 HIGD1AQ9Y241 93 aa9.09□□□□□ -0.95
LDLR-208ENST00000558518 K7ERJ3 54 aa9.09□□□□□ -0.96
LDLR-208ENST00000558518 PRSS1P07477 247 aa9.09□□□□□ -0.96
LDLR-208ENST00000558518 FAM162BQ5T6X4 162 aa9.09□□□□□ -0.96
LDLR-208ENST00000558518 LYPD2Q6UXB3 125 aa9.09□□□□□ -0.96
LDLR-208ENST00000558518 GTF2H5Q6ZYL4 71 aa9.09□□□□□ -0.96
LDLR-208ENST00000558518 SCRT2Q9NQ03 307 aa9.09□□□□□ -0.96
LDLR-208ENST00000558518 ASH1LQ9NR48 2969 aaKnown RBP9.09□□□□□ -0.96
LDLR-208ENST00000558518 SPCS1Q9Y6A9 102 aa9.09□□□□□ -0.96
LDLR-208ENST00000558518 FCGR2BP31994 310 aaPredicted RBP9.08□□□□□ -0.96
LDLR-208ENST00000558518 KLF5Q13887 457 aaPredicted RBP9.08□□□□□ -0.96
LDLR-208ENST00000558518 FER1L6-AS1Q8NA97 138 aa9.08□□□□□ -0.96
LDLR-208ENST00000558518 GTSF1LQ9H1H1 148 aa9.08□□□□□ -0.96
LDLR-208ENST00000558518 ZNF71Q9NQZ8 489 aaPredicted RBP9.08□□□□□ -0.96
LDLR-208ENST00000558518 IGHV3OR16-13A0A075B7E8 117 aa9.08□□□□□ -0.96
LDLR-208ENST00000558518 IGHV3-74A0A0B4J1X5 117 aa9.08□□□□□ -0.96
LDLR-208ENST00000558518 LYNX1G3V0Z9 82 aa9.08□□□□□ -0.96
LDLR-208ENST00000558518 LYNX1P0DP58 116 aa9.08□□□□□ -0.96
LDLR-208ENST00000558518 EVI2AP22794 236 aa9.08□□□□□ -0.96
LDLR-208ENST00000558518 RPL27AP46776 148 aaKnown RBP9.08□□□□□ -0.96
LDLR-208ENST00000558518 MEF2CQ06413 473 aaPredicted RBP9.08□□□□□ -0.96
LDLR-208ENST00000558518 SLC25A48Q6ZT89 311 aaKnown RBP9.08□□□□□ -0.96
LDLR-208ENST00000558518 CACNG8Q8WXS5 425 aa9.08□□□□□ -0.96
LDLR-208ENST00000558518 IGKV1D-37A0A075B6S9 117 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 CGB1A6NKQ9 187 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 CD5LO43866 347 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 SMAGPQ0VAQ4 97 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 HES1Q14469 280 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 C8orf49Q96NF6 230 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 RASL11BQ9BPW5 248 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 CSTL1Q9H114 145 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 ATRXP46100 2492 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 A0A0G2JLM5 398 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 OR2J3O76001 311 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 TWIST1Q15672 202 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 OR2K2Q8NGT1 345 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 Q8TAT8 98 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 OSR1Q8TAX0 266 aaPredicted RBP9.07□□□□□ -0.96
LDLR-208ENST00000558518 C1RLQ9NZP8 487 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 SPG11Q96JI7 2443 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.07□□□□□ -0.963e-7■■■□□ 14.8
LDLR-208ENST00000558518 A1L4Q6 167 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 PRR33A8MZF0 331 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 J3KRW8 73 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 RIGQ13278 110 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 AARDQ4LEZ3 155 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 TMEM200BQ69YZ2 307 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 FAM231DQ6ZW35 169 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 VSTM2AQ8TAG5 236 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 CHCHD1Q96BP2 118 aaKnown RBP9.07□□□□□ -0.96
LDLR-208ENST00000558518 JMJD8Q96S16 334 aa9.07□□□□□ -0.96
LDLR-208ENST00000558518 CKS2P33552 79 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 RHOGP84095 191 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 MBNL2Q5VZF2 373 aaKnown RBP9.06□□□□□ -0.96
LDLR-208ENST00000558518 PET117Q6UWS5 81 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 WIPF2Q8TF74 440 aaPredicted RBP9.06□□□□□ -0.96
LDLR-208ENST00000558518 DYNLRB1Q9NP97 96 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 A0A1B0GXF2 115 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 A6NDN8 102 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 NDUFB3O43676 98 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 ATP5L2Q7Z4Y8 100 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 TMEM75Q8N9X5 138 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 OR4A5Q8NH83 315 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 PRELID3AQ96N28 172 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 SLC25A15Q9Y619 301 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 TMEM238C9JI98 176 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 IL4P05112 153 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 ZNF474Q6S9Z5 364 aaPredicted RBP9.06□□□□□ -0.96
LDLR-208ENST00000558518 Q86TA4 180 aa9.06□□□□□ -0.96
LDLR-208ENST00000558518 ANKHD1Q8IWZ3 2542 aaKnown RBP9.05□□□□□ -0.96
LDLR-208ENST00000558518 ORM1P02763 201 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 RASL11AQ6T310 242 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 LYZL1Q6UWQ5 148 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.05□□□□□ -0.96
LDLR-208ENST00000558518 NEU4Q8WWR8 484 aaPredicted RBP9.05□□□□□ -0.96
LDLR-208ENST00000558518 WFDC12Q8WWY7 111 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 FMC1Q96HJ9 113 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 ZNF414Q96IQ9 312 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 TMEM133Q9H2Q1 129 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 DKK2Q9UBU2 259 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 RELNP78509 3460 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 GLRXP35754 106 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 STXBP6Q8NFX7 210 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 ZNF747Q9BV97 191 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 IGKV2-40A0A087WW87 121 aaPredicted RBP9.05□□□□□ -0.96
LDLR-208ENST00000558518 PSMB11A5LHX3 300 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 IGKV2D-40P01614 121 aaPredicted RBP9.05□□□□□ -0.96
LDLR-208ENST00000558518 COX8AP10176 69 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 C1orf185Q5T7R7 199 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms