RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 M0QZ24 198 aa16.71■□□□□ 0.26
TMEM260-216ENST00000557657 IGHV3OR16-8A0A075B7F1 116 aa16.7■□□□□ 0.26
TMEM260-216ENST00000557657 ODF3BA8MYP8 253 aa16.7■□□□□ 0.26
TMEM260-216ENST00000557657 IGLV2-11P01706 119 aa16.7■□□□□ 0.26
TMEM260-216ENST00000557657 NHLH1Q02575 133 aa16.7■□□□□ 0.26
TMEM260-216ENST00000557657 ZNF491Q8N8L2 437 aa16.7■□□□□ 0.26
TMEM260-216ENST00000557657 SNHG12Q9BXW3 62 aa16.7■□□□□ 0.26
TMEM260-216ENST00000557657 RPP21Q9H633 154 aaKnown RBP16.7■□□□□ 0.26
TMEM260-216ENST00000557657 C5orf64Q2M2E5 130 aa16.7■□□□□ 0.26
TMEM260-216ENST00000557657 NIT1Q86X76 327 aa16.7■□□□□ 0.26
TMEM260-216ENST00000557657 ZNF785A8K8V0 405 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 M0R3E3 92 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 ZNF324O75467 553 aaPredicted RBP16.69■□□□□ 0.26
TMEM260-216ENST00000557657 PRTN3P24158 256 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 FCGR2BP31994 310 aaPredicted RBP16.69■□□□□ 0.26
TMEM260-216ENST00000557657 FOXA3P55318 350 aaPredicted RBP16.69■□□□□ 0.26
TMEM260-216ENST00000557657 PAX2Q02962 417 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 TEX43Q6ZNM6 134 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 FMC1Q96HJ9 113 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 FANCD2OSQ96PS1 177 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 RNF5Q99942 180 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 P01737 135 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 Q86TA4 180 aa16.69■□□□□ 0.26
TMEM260-216ENST00000557657 IGHV3-35A0A0C4DH35 117 aa16.68■□□□□ 0.26
TMEM260-216ENST00000557657 C19orf71A6NCJ1 209 aa16.68■□□□□ 0.26
TMEM260-216ENST00000557657 ZNF705AQ6ZN79 300 aaPredicted RBP16.68■□□□□ 0.26
TMEM260-216ENST00000557657 PRSS22Q9GZN4 317 aa16.68■□□□□ 0.26
TMEM260-216ENST00000557657 NDUFA3O95167 84 aa16.68■□□□□ 0.26
TMEM260-216ENST00000557657 WIPF2Q8TF74 440 aaPredicted RBP16.68■□□□□ 0.26
TMEM260-216ENST00000557657 RNF125Q96EQ8 232 aa16.68■□□□□ 0.26
TMEM260-216ENST00000557657 DIRC3C9JPN6 131 aa16.67■□□□□ 0.26
TMEM260-216ENST00000557657 ATOH7Q8N100 152 aa16.67■□□□□ 0.26
TMEM260-216ENST00000557657 NPBQ8NG41 125 aa16.67■□□□□ 0.26
TMEM260-216ENST00000557657 SHANK2-AS3Q9BTD1 123 aa16.67■□□□□ 0.26
TMEM260-216ENST00000557657 OTORQ9NRC9 128 aa16.67■□□□□ 0.26
TMEM260-216ENST00000557657 A0A1B0GXF2 115 aa16.67■□□□□ 0.26
TMEM260-216ENST00000557657 SH2D7A6NKC9 451 aaPredicted RBP16.67■□□□□ 0.26
TMEM260-216ENST00000557657 COX19Q49B96 90 aa16.67■□□□□ 0.26
TMEM260-216ENST00000557657 LCN12Q6JVE5 192 aa16.67■□□□□ 0.26
TMEM260-216ENST00000557657 TRBV19A0A075B6N1 114 aa16.66■□□□□ 0.26
TMEM260-216ENST00000557657 C3orf79P0CE67 100 aa16.66■□□□□ 0.26
TMEM260-216ENST00000557657 CEACAM3P40198 252 aa16.66■□□□□ 0.26
TMEM260-216ENST00000557657 UCNP55089 124 aa16.66■□□□□ 0.26
TMEM260-216ENST00000557657 PMCHL1Q16048 86 aa16.66■□□□□ 0.26
TMEM260-216ENST00000557657 ALKBH7Q9BT30 221 aaPredicted RBP16.66■□□□□ 0.26
TMEM260-216ENST00000557657 F8W735 103 aaPredicted RBP16.66■□□□□ 0.26
TMEM260-216ENST00000557657 GNG7O60262 68 aa16.66■□□□□ 0.26
TMEM260-216ENST00000557657 FAM120AOSQ5T036 256 aa16.66■□□□□ 0.26
TMEM260-216ENST00000557657 H3BRN7 92 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 M0R1W7 72 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 HOXB4P17483 251 aaPredicted RBP16.65■□□□□ 0.26
TMEM260-216ENST00000557657 DAZAP1Q96EP5 407 aaKnown RBP16.65■□□□□ 0.26
TMEM260-216ENST00000557657 C2orf88Q9BSF0 95 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 VAMP8Q9BV40 100 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 UBTD1Q9HAC8 227 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 TMEM14CQ9P0S9 112 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 OR2J3O76001 311 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 IGLC2P0DOY2 106 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 COL8A1P27658 744 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 SSTP61278 116 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 RNASEKQ6P5S7 137 aaKnown RBP16.65■□□□□ 0.26
TMEM260-216ENST00000557657 SIGLEC15Q6ZMC9 328 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 ARPC1AQ92747 370 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 ZC2HC1AQ96GY0 325 aa16.65■□□□□ 0.26
TMEM260-216ENST00000557657 NDUFB8O95169 186 aa16.64■□□□□ 0.25
TMEM260-216ENST00000557657 HLA-DRB1P01911 266 aa16.64■□□□□ 0.25
TMEM260-216ENST00000557657 MAJINQ3KP22 176 aa16.64■□□□□ 0.25
TMEM260-216ENST00000557657 BPIFA4PQ86YQ2 179 aa16.64■□□□□ 0.25
TMEM260-216ENST00000557657 Q56UQ5 140 aa16.64■□□□□ 0.25
TMEM260-216ENST00000557657 NEU4Q8WWR8 484 aaPredicted RBP16.64■□□□□ 0.25
TMEM260-216ENST00000557657 URB1-AS1Q96HZ7 61 aa16.64■□□□□ 0.25
TMEM260-216ENST00000557657 CELSR2Q9HCU4 2923 aa16.63■□□□□ 0.25
TMEM260-216ENST00000557657 IGLV11-55A0A075B6I3 123 aa16.63■□□□□ 0.25
TMEM260-216ENST00000557657 OR2T8A6NH00 312 aa16.63■□□□□ 0.25
TMEM260-216ENST00000557657 UQCRFS1P47985 274 aa16.63■□□□□ 0.25
TMEM260-216ENST00000557657 A8MWL6 223 aa16.63■□□□□ 0.25
TMEM260-216ENST00000557657 MRPS12O15235 138 aaKnown RBP16.63■□□□□ 0.25
TMEM260-216ENST00000557657 HBBP68871 147 aa16.63■□□□□ 0.25
TMEM260-216ENST00000557657 IGFL4Q6B9Z1 124 aa16.63■□□□□ 0.25
TMEM260-216ENST00000557657 OR4F17Q8NGA8 305 aa16.62■□□□□ 0.25
TMEM260-216ENST00000557657 CHRDL1Q9BU40 450 aa16.62■□□□□ 0.25
TMEM260-216ENST00000557657 LPAR2Q9HBW0 351 aa16.62■□□□□ 0.25
TMEM260-216ENST00000557657 CFAP46Q8IYW2 2715 aa16.62■□□□□ 0.25
TMEM260-216ENST00000557657 RASL11AQ6T310 242 aa16.62■□□□□ 0.25
TMEM260-216ENST00000557657 ZNF562Q6V9R5 426 aa16.62■□□□□ 0.25
TMEM260-216ENST00000557657 ZNF414Q96IQ9 312 aa16.62■□□□□ 0.25
TMEM260-216ENST00000557657 SRSF8Q9BRL6 282 aaKnown RBP16.61■□□□□ 0.25
TMEM260-216ENST00000557657 WI2-2373I1.2A0A1W2PRP0 233 aa16.61■□□□□ 0.25
TMEM260-216ENST00000557657 HSBP1O75506 76 aa16.61■□□□□ 0.25
TMEM260-216ENST00000557657 EGR2P11161 476 aaPredicted RBP16.61■□□□□ 0.25
TMEM260-216ENST00000557657 CRIP1P50238 77 aa16.61■□□□□ 0.25
TMEM260-216ENST00000557657 C8orf49Q96NF6 230 aa16.61■□□□□ 0.25
TMEM260-216ENST00000557657 ZNF492Q9P255 531 aa16.61■□□□□ 0.25
TMEM260-216ENST00000557657 SPG11Q96JI7 2443 aa16.61■□□□□ 0.25
TMEM260-216ENST00000557657 TMEM11P17152 192 aa16.6■□□□□ 0.25
TMEM260-216ENST00000557657 ZNF138P52744 262 aa16.6■□□□□ 0.25
TMEM260-216ENST00000557657 DTX2Q86UW9 622 aa16.6■□□□□ 0.25
TMEM260-216ENST00000557657 SMIM12Q96EX1 92 aa16.6■□□□□ 0.25
TMEM260-216ENST00000557657 CLEC5AQ9NY25 188 aa16.6■□□□□ 0.25
TMEM260-216ENST00000557657 CSMD2Q7Z408 3487 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms