RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ARPC1AQ92747 370 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 RNF2Q99496 336 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 C20orf24Q9BUV8 137 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 ABCA13Q86UQ4 5058 aa9.56□□□□□ -0.88
SHMT2-230ENST00000557427 DNAH10Q8IVF4 4471 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 IGKV1OR2-108A0A075B7D4 117 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 COLCA2A8K830 154 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 TEX22C9J3V5 150 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 PAGE4O60829 102 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 IGHV3-11P01762 117 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 DEFA4P12838 97 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 AKIRIN2Q53H80 203 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 C19orf54Q5BKX5 351 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 CYP2G1PQ6ZSU1 146 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 OR1P1Q8NH06 330 aa9.55□□□□□ -0.88
SHMT2-230ENST00000557427 FNDC4Q9H6D8 234 aaPredicted RBP9.55□□□□□ -0.88
SHMT2-230ENST00000557427 ZNF727A8MUV8 499 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 F6UZH7 168 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 PDE6DO43924 150 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 OR5G3P0C626 314 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 ARL14EPLP0DKL9 152 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 APELAP0DMC3 54 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 CRIP2P52943 208 aaPredicted RBP9.54□□□□□ -0.88
SHMT2-230ENST00000557427 SELENOTP62341 195 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 SSBP2P81877 361 aaPredicted RBP9.54□□□□□ -0.88
SHMT2-230ENST00000557427 MLANAQ16655 118 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 IQCF2Q8IXL9 164 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 MYOZ3Q8TDC0 251 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 GATAD1Q8WUU5 269 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 SRSF12Q8WXF0 261 aaKnown RBP9.54□□□□□ -0.88
SHMT2-230ENST00000557427 MRPL32Q9BYC8 188 aaKnown RBP9.54□□□□□ -0.88
SHMT2-230ENST00000557427 SDF2L1Q9HCN8 221 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 NAT8Q9UHE5 227 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 FUT9Q9Y231 359 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 F11RQ9Y624 299 aaKnown RBP9.54□□□□□ -0.88
SHMT2-230ENST00000557427 ARL2-SNX15V9GYD0 113 aa9.54□□□□□ -0.88
SHMT2-230ENST00000557427 MT-ND4LP03901 98 aa9.53□□□□□ -0.88
SHMT2-230ENST00000557427 TRGV3P03979 118 aa9.53□□□□□ -0.88
SHMT2-230ENST00000557427 FOLR2P14207 255 aa9.53□□□□□ -0.88
SHMT2-230ENST00000557427 AREGP15514 252 aa9.53□□□□□ -0.88
SHMT2-230ENST00000557427 GCHFRP30047 84 aa9.53□□□□□ -0.88
SHMT2-230ENST00000557427 AKR1C3P42330 323 aa9.53□□□□□ -0.88
SHMT2-230ENST00000557427 TPPP2P59282 170 aa9.53□□□□□ -0.88
SHMT2-230ENST00000557427 LINC00476Q8WZB0 136 aa9.53□□□□□ -0.88
SHMT2-230ENST00000557427 ACY3Q96HD9 319 aa9.53□□□□□ -0.88
SHMT2-230ENST00000557427 SEPSECSQ9HD40 501 aaKnown RBP9.53□□□□□ -0.88
SHMT2-230ENST00000557427 TECRQ9NZ01 308 aaKnown RBP9.53□□□□□ -0.88
SHMT2-230ENST00000557427 IGKV1D-37A0A075B6S9 117 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 CXorf65A6NEN9 183 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 C11orf94C9JXX5 98 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 CLN5O75503 358 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 REG1AP05451 166 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 MFAP2P55001 183 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 TAS2R45P59539 299 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 FHL3Q13643 280 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 TMEM241Q24JQ0 296 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 RNF212Q495C1 297 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 ASPHD1Q5U4P2 390 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 FAM78BQ5VT40 261 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 SPATA31B1PQ5VZV4 182 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 OR1L6Q8NGR2 347 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 OR1L4Q8NGR5 311 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 NPIPB3Q92617 1050 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 YPEL4Q96NS1 127 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 PFDN5Q99471 154 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 TRGV9Q99603 122 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 SMIM7Q9BQ49 75 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 PARLQ9H300 379 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 TMEM167BQ9NRX6 74 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 TMEM242Q9NWH2 141 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 PRELID1Q9Y255 219 aa9.52□□□□□ -0.89
SHMT2-230ENST00000557427 IGHV4OR15-8A0A075B7B6 117 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 A0A087WW49 117 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 LINC01619G3V211 115 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 OR2C1O95371 312 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 GP9P14770 177 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 RND2P52198 227 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 SLURP1P55000 103 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 FLI1Q01543 452 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-230ENST00000557427 PQLC2Q6ZP29 291 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 MIR17HGQ75NE6 70 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 TMEM116Q8NCL8 245 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 DLX4Q92988 240 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-230ENST00000557427 HIST1H2BAQ96A08 127 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 MISP3Q96FF7 219 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 CTDSP1Q9GZU7 261 aa9.51□□□□□ -0.89
SHMT2-230ENST00000557427 LGALS1P09382 135 aaKnown RBP9.5□□□□□ -0.89
SHMT2-230ENST00000557427 CTRB1P17538 263 aa9.5□□□□□ -0.89
SHMT2-230ENST00000557427 GATA2P23769 480 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-230ENST00000557427 ATP5G3P48201 142 aa9.5□□□□□ -0.89
SHMT2-230ENST00000557427 INSL3P51460 131 aa9.5□□□□□ -0.89
SHMT2-230ENST00000557427 CST9LP1Q5W188 147 aa9.5□□□□□ -0.89
SHMT2-230ENST00000557427 CTRB2Q6GPI1 263 aa9.5□□□□□ -0.89
SHMT2-230ENST00000557427 RPUSD4Q96CM3 377 aaKnown RBP9.5□□□□□ -0.89
SHMT2-230ENST00000557427 DNAJC4Q9NNZ3 241 aa9.5□□□□□ -0.89
SHMT2-230ENST00000557427 C19orf73Q9NVV2 129 aa9.5□□□□□ -0.89
SHMT2-230ENST00000557427 MRPL36Q9P0J6 103 aaKnown RBP9.5□□□□□ -0.89
SHMT2-230ENST00000557427 OVOL1O14753 267 aa9.49□□□□□ -0.89
SHMT2-230ENST00000557427 C8orf88P0DMB2 117 aa9.49□□□□□ -0.89
SHMT2-230ENST00000557427 IGHV4-30-4P0DP06 118 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms