RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 RCL1Q9Y2P8 373 aaKnown RBP7.76□□□□□ -1.17
SYNE2-227ENST00000557307 STRAPQ9Y3F4 350 aaKnown RBP7.76□□□□□ -1.17
SYNE2-227ENST00000557307 RYR1P21817 5038 aa7.76□□□□□ -1.17
SYNE2-227ENST00000557307 M0R2N4 97 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 SCGB1D2O95969 90 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 METTL15P1P0C7V9 234 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 IL7P13232 177 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 CNN1P51911 297 aaKnown RBP7.75□□□□□ -1.17
SYNE2-227ENST00000557307 SPINK13Q1W4C9 94 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 TMEM14EPQ6UXP3 125 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 BAP18Q8IXM2 172 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 BPIFCQ8NFQ6 507 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 OR11H7Q8NGC8 314 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 CLUHP3Q96NS8 147 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 CIB3Q96Q77 187 aaPredicted RBP7.75□□□□□ -1.17
SYNE2-227ENST00000557307 SLC25A39Q9BZJ4 359 aaPredicted RBP7.75□□□□□ -1.17
SYNE2-227ENST00000557307 YTHDF2Q9Y5A9 579 aaKnown RBP7.75□□□□□ -1.17
SYNE2-227ENST00000557307 RFNGQ9Y644 331 aa7.75□□□□□ -1.17
SYNE2-227ENST00000557307 ABCA13Q86UQ4 5058 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 LOC102723971A0A1B0GUV8 181 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 A0A1B0GVY2 172 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 MRPS12O15235 138 aaKnown RBP7.74□□□□□ -1.17
SYNE2-227ENST00000557307 RTL8CO15255 209 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 PLA2G10O15496 165 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 FABP1P07148 127 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 LINC00869P0C866 280 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 HTN3P15516 51 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 GALR1P47211 349 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 FGL1Q08830 312 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 SLC38A11Q08AI6 406 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 SPANXN2Q5MJ10 180 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 MORN5Q5VZ52 161 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 TRIQKQ629K1 86 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 EBLN2Q6P2I7 272 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 TMEM144Q7Z5S9 345 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 DEDD2Q8WXF8 326 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 SHANK2-AS3Q9BTD1 123 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 TMEM147Q9BVK8 224 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 RPRMQ9NS64 109 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 SLC45A2Q9UMX9 530 aa7.74□□□□□ -1.17
SYNE2-227ENST00000557307 TRAV12-2A0A075B6T6 113 aa7.73□□□□□ -1.17
SYNE2-227ENST00000557307 PLAC8L1A1L4L8 177 aa7.73□□□□□ -1.17
SYNE2-227ENST00000557307 ZNF705GA8MUZ8 300 aaPredicted RBP7.73□□□□□ -1.17
SYNE2-227ENST00000557307 H3BTX0 84 aa7.73□□□□□ -1.17
SYNE2-227ENST00000557307 IL5P05113 134 aa7.73□□□□□ -1.17
SYNE2-227ENST00000557307 SPART-AS1P0CW21 52 aa7.73□□□□□ -1.17
SYNE2-227ENST00000557307 AZU1P20160 251 aa7.73□□□□□ -1.17
SYNE2-227ENST00000557307 KIR3DS1Q14943 382 aa7.73□□□□□ -1.17
SYNE2-227ENST00000557307 IAH1Q2TAA2 248 aaPredicted RBP7.73□□□□□ -1.17
SYNE2-227ENST00000557307 ZBTB8BQ8NAP8 495 aaPredicted RBP7.73□□□□□ -1.17
SYNE2-227ENST00000557307 C7orf50Q9BRJ6 194 aaKnown RBP7.73□□□□□ -1.17
SYNE2-227ENST00000557307 NIPSNAP3BQ9BS92 247 aa7.73□□□□□ -1.17
SYNE2-227ENST00000557307 PARD6GQ9BYG4 376 aaPredicted RBP7.73□□□□□ -1.17
SYNE2-227ENST00000557307 IGLV2-18A0A075B6J9 118 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 NAP1L6A6NFF2 107 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 SMIM9A6NGZ8 99 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 ZNF701M0R085 212 aaPredicted RBP7.72□□□□□ -1.17
SYNE2-227ENST00000557307 SLC17A3O00476 420 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 MBPP02686 304 aaPredicted RBP7.72□□□□□ -1.17
SYNE2-227ENST00000557307 OR5G3P0C626 314 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 INPP1P49441 399 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 MEOX2P50222 304 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 RPP30P78346 268 aaKnown RBP7.72□□□□□ -1.17
SYNE2-227ENST00000557307 FCN2Q15485 313 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 C4orf46Q504U0 113 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 POM121L12Q8N7R1 296 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 SMIM8Q96KF7 97 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 IGF2BP2-AS1Q96M15 143 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 NDUFAF3Q9BU61 184 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 ARL6Q9H0F7 186 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 C20orf85Q9H1P6 137 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 PFDN2Q9UHV9 154 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 HIGD1AQ9Y241 93 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 GOLT1BQ9Y3E0 138 aa7.72□□□□□ -1.17
SYNE2-227ENST00000557307 PIGBOS1A0A0B4J2F0 54 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 C7orf66A4D0T2 115 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 CFDP00746 253 aaPredicted RBP7.71□□□□□ -1.18
SYNE2-227ENST00000557307 HBE1P02100 147 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 CXCL3P19876 107 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 PLP1P60201 277 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 DLK1P80370 383 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 RRN3P1Q2M238 152 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 SPATA31B1PQ5VZV4 182 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 TMEM88Q6PEY1 159 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 ZNF738Q8NE65 137 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 MITD1Q8WV92 249 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 MGST2Q99735 147 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 SEC22CQ9BRL7 303 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 ARV1Q9H2C2 271 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 C11orf1Q9H5F2 150 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 GSKIPQ9P0R6 139 aa7.71□□□□□ -1.18
SYNE2-227ENST00000557307 TRAV6A0A075B6T7 132 aa7.7□□□□□ -1.18
SYNE2-227ENST00000557307 A0A087X0K7 114 aa7.7□□□□□ -1.18
SYNE2-227ENST00000557307 TMEM189A5PLL7 270 aa7.7□□□□□ -1.18
SYNE2-227ENST00000557307 PRAC2D3DTV9 90 aa7.7□□□□□ -1.18
SYNE2-227ENST00000557307 HYPMO75409 117 aa7.7□□□□□ -1.18
SYNE2-227ENST00000557307 RAP2BP61225 183 aa7.7□□□□□ -1.18
SYNE2-227ENST00000557307 HIST1H1AQ02539 215 aaPredicted RBP7.7□□□□□ -1.18
SYNE2-227ENST00000557307 TMEM37Q8WXS4 190 aa7.7□□□□□ -1.18
SYNE2-227ENST00000557307 DNAH5Q8TE73 4624 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms