RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 CYB561D1Q8N8Q1 229 aa23.36■■□□□ 1.33
CCM2-219ENST00000544363 A0A1W2PRE2 83 aa23.35■■□□□ 1.33
CCM2-219ENST00000544363 NBEAP1P0C6P0 100 aa23.35■■□□□ 1.33
CCM2-219ENST00000544363 NPPCP23582 126 aa23.35■■□□□ 1.33
CCM2-219ENST00000544363 CRYBB3P26998 211 aa23.35■■□□□ 1.33
CCM2-219ENST00000544363 MRPS12O15235 138 aaKnown RBP23.34■■□□□ 1.33
CCM2-219ENST00000544363 HIST1H1EP10412 219 aaKnown RBP23.34■■□□□ 1.33
CCM2-219ENST00000544363 TMEM190Q8WZ59 177 aa23.34■■□□□ 1.33
CCM2-219ENST00000544363 ZNF207O43670 478 aaKnown RBP23.33■■□□□ 1.33
CCM2-219ENST00000544363 GPHB5Q86YW7 130 aa23.33■■□□□ 1.33
CCM2-219ENST00000544363 U3KQE9 123 aa23.33■■□□□ 1.33
CCM2-219ENST00000544363 NF1P21359 2839 aa23.33■■□□□ 1.33
CCM2-219ENST00000544363 TMEM250H0YL14 139 aa23.33■■□□□ 1.32
CCM2-219ENST00000544363 BUB3O43684 328 aa23.33■■□□□ 1.32
CCM2-219ENST00000544363 SNRPCP09234 159 aaKnown RBP23.33■■□□□ 1.32
CCM2-219ENST00000544363 FAM106AQ4KMX7 169 aa23.33■■□□□ 1.32
CCM2-219ENST00000544363 OR4F17Q8NGA8 305 aa23.33■■□□□ 1.32
CCM2-219ENST00000544363 CARHSP1Q9Y2V2 147 aaKnown RBP23.33■■□□□ 1.32
CCM2-219ENST00000544363 PDE6DO43924 150 aa23.32■■□□□ 1.32
CCM2-219ENST00000544363 CEBPGP53567 150 aa23.32■■□□□ 1.32
CCM2-219ENST00000544363 RPEL1Q2QD12 228 aa23.32■■□□□ 1.32
CCM2-219ENST00000544363 SOHLH1Q5JUK2 328 aa23.32■■□□□ 1.32
CCM2-219ENST00000544363 BLNKQ8WV28 456 aa23.32■■□□□ 1.32
CCM2-219ENST00000544363 H3BQ15 152 aa23.31■■□□□ 1.32
CCM2-219ENST00000544363 RPL7P18124 248 aaKnown RBP23.31■■□□□ 1.32
CCM2-219ENST00000544363 C18orf65Q6ZTR6 163 aa23.31■■□□□ 1.32
CCM2-219ENST00000544363 OR8I2Q8N0Y5 310 aa23.31■■□□□ 1.32
CCM2-219ENST00000544363 C4orf3Q8WVX3 66 aa23.31■■□□□ 1.32
CCM2-219ENST00000544363 WFDC12Q8WWY7 111 aa23.31■■□□□ 1.32
CCM2-219ENST00000544363 ZNF586Q9NXT0 402 aa23.31■■□□□ 1.32
CCM2-219ENST00000544363 RNF114Q9Y508 228 aa23.31■■□□□ 1.32
CCM2-219ENST00000544363 IGHV4OR15-8A0A075B7B6 117 aa23.3■■□□□ 1.32
CCM2-219ENST00000544363 A0A087WW49 117 aa23.3■■□□□ 1.32
CCM2-219ENST00000544363 ZNF320A2RRD8 509 aa23.3■■□□□ 1.32
CCM2-219ENST00000544363 APOC3P02656 99 aa23.3■■□□□ 1.32
CCM2-219ENST00000544363 IGLC2P0DOY2 106 aa23.3■■□□□ 1.32
CCM2-219ENST00000544363 SRSF2Q01130 221 aaKnown RBP23.3■■□□□ 1.32
CCM2-219ENST00000544363 KHDC1LQ5JSQ8 128 aa23.3■■□□□ 1.32
CCM2-219ENST00000544363 CCDC28AQ8IWP9 274 aa23.3■■□□□ 1.32
CCM2-219ENST00000544363 NKX6-2Q9C056 277 aaPredicted RBP23.3■■□□□ 1.32
CCM2-219ENST00000544363 F6UZH7 168 aa23.3■■□□□ 1.32
CCM2-219ENST00000544363 APOHP02749 345 aaPredicted RBP23.3■■□□□ 1.32
CCM2-219ENST00000544363 C1orf194Q5T5A4 169 aa23.3■■□□□ 1.32
CCM2-219ENST00000544363 GGTLC3B5MD39 225 aa23.29■■□□□ 1.32
CCM2-219ENST00000544363 HAX1O00165 279 aa23.29■■□□□ 1.32
CCM2-219ENST00000544363 FAM90A2PQ658T7 463 aa23.29■■□□□ 1.32
CCM2-219ENST00000544363 CD28P10747 220 aa23.28■■□□□ 1.32
CCM2-219ENST00000544363 SUMO1P63165 101 aaKnown RBP23.28■■□□□ 1.32
CCM2-219ENST00000544363 H3BTX0 84 aa23.27■■□□□ 1.32
CCM2-219ENST00000544363 RANP62826 216 aaKnown RBP23.27■■□□□ 1.32
CCM2-219ENST00000544363 GPR82Q96P67 336 aa23.27■■□□□ 1.32
CCM2-219ENST00000544363 IGHV3OR16-13A0A075B7E8 117 aa23.26■■□□□ 1.31
CCM2-219ENST00000544363 IGHV3-49A0A0A0MS15 119 aa23.26■■□□□ 1.31
CCM2-219ENST00000544363 IGHV3-74A0A0B4J1X5 117 aa23.26■■□□□ 1.31
CCM2-219ENST00000544363 IGHV3-66A0A0C4DH42 116 aa23.26■■□□□ 1.31
CCM2-219ENST00000544363 K7EMT4 169 aa23.26■■□□□ 1.31
CCM2-219ENST00000544363 PROK1P58294 105 aa23.26■■□□□ 1.31
CCM2-219ENST00000544363 DAZ1Q9NQZ3 744 aaKnown RBP23.26■■□□□ 1.31
CCM2-219ENST00000544363 TRBV19A0A075B6N1 114 aa23.26■■□□□ 1.31
CCM2-219ENST00000544363 KLHL30-AS1Q8NEE0 82 aa23.26■■□□□ 1.31
CCM2-219ENST00000544363 MYCNOSP40205 109 aa23.25■■□□□ 1.31
CCM2-219ENST00000544363 C17orf77Q96MU5 243 aa23.25■■□□□ 1.31
CCM2-219ENST00000544363 UFC1Q9Y3C8 167 aa23.25■■□□□ 1.31
CCM2-219ENST00000544363 SMAD5-AS1Q9Y6J3 95 aa23.25■■□□□ 1.31
CCM2-219ENST00000544363 SCO2A0A1W2PP80 73 aa23.24■■□□□ 1.31
CCM2-219ENST00000544363 HOXD3P31249 432 aaPredicted RBP23.24■■□□□ 1.31
CCM2-219ENST00000544363 GUCA2BQ16661 112 aa23.24■■□□□ 1.31
CCM2-219ENST00000544363 DEFB136Q30KP8 78 aa23.24■■□□□ 1.31
CCM2-219ENST00000544363 TM4SF20Q53R12 229 aa23.24■■□□□ 1.31
CCM2-219ENST00000544363 C11orf44Q8N8P7 122 aa23.24■■□□□ 1.31
CCM2-219ENST00000544363 ELOVL1Q9BW60 279 aa23.24■■□□□ 1.31
CCM2-219ENST00000544363 NDUFB4O95168 129 aa23.23■■□□□ 1.31
CCM2-219ENST00000544363 HIST2H2BDQ6DRA6 164 aa23.23■■□□□ 1.31
CCM2-219ENST00000544363 C16orf54Q6UWD8 224 aa23.23■■□□□ 1.31
CCM2-219ENST00000544363 REC114Q7Z4M0 266 aa23.23■■□□□ 1.31
CCM2-219ENST00000544363 C11orf52Q96A22 123 aa23.23■■□□□ 1.31
CCM2-219ENST00000544363 RPUSD4Q96CM3 377 aaKnown RBP23.23■■□□□ 1.31
CCM2-219ENST00000544363 Q9H3A6 140 aa23.23■■□□□ 1.31
CCM2-219ENST00000544363 A0A1W2PS18 150 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 LINC01619G3V211 115 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 GALR1P47211 349 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 PDE6HQ13956 83 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 SVBPQ8N300 66 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 PARLQ9H300 379 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 IGHV7-4-1A0A0J9YVY3 117 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 PGPA6NDG6 321 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 LGALS9O00182 355 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 ATF4P18848 351 aaPredicted RBP23.22■■□□□ 1.31
CCM2-219ENST00000544363 OR11H1Q8NG94 326 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 OR1N2Q8NGR9 330 aa23.22■■□□□ 1.31
CCM2-219ENST00000544363 CITED2Q99967 270 aaPredicted RBP23.22■■□□□ 1.31
CCM2-219ENST00000544363 TSSC4Q9Y5U2 329 aaPredicted RBP23.22■■□□□ 1.31
CCM2-219ENST00000544363 GLMPQ8WWB7 406 aa23.21■■□□□ 1.31
CCM2-219ENST00000544363 DPF1Q92782 380 aa23.21■■□□□ 1.31
CCM2-219ENST00000544363 GRAMD2BQ96HH9 432 aa23.21■■□□□ 1.31
CCM2-219ENST00000544363 OTORQ9NRC9 128 aa23.21■■□□□ 1.31
CCM2-219ENST00000544363 SYNJ2BPP57105 145 aa23.2■■□□□ 1.3
CCM2-219ENST00000544363 ZNF674Q2M3X9 581 aa23.2■■□□□ 1.3
CCM2-219ENST00000544363 FAM74A3Q4VXF1 159 aa23.2■■□□□ 1.3
CCM2-219ENST00000544363 C1QL4Q86Z23 238 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms