RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 A0A1W2PRM7 423 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 FXYD7P58549 80 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 RHOGP84095 191 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 TEX36Q5VZQ5 186 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 RASL11BQ9BPW5 248 aa8.99□□□□□ -0.97
SYNE1-237ENST00000539504 K7ERU9 68 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 NEU4Q8WWR8 484 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-237ENST00000539504 K7EQM0 130 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 HAX1O00165 279 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 LGALS7P47929 136 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 TMEM108Q6UXF1 575 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 SH3BGRL2Q9UJC5 107 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 DSCAML1Q8TD84 2053 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 NCR2O95944 276 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 TMEM97Q5BJF2 176 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 SLC25A39Q9BZJ4 359 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-237ENST00000539504 HILPDAQ9Y5L2 63 aa8.98□□□□□ -0.97
SYNE1-237ENST00000539504 C17orf100A8MU93 164 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 KLK10O43240 276 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 CT45A10P0DMU9 189 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 FAM231BA6NCW3 169 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 CNIH1O95406 144 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 COX8AP10176 69 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 RAB37Q96AX2 223 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 C17orf77Q96MU5 243 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 ZNF747Q9BV97 191 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 FAM215AQ9Y5M1 114 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 CACNA1HO95180 2353 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 ZFHX4Q86UP3 3567 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 COL27A1Q8IZC6 1860 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-237ENST00000539504 ASPMQ8IZT6 3477 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 IFI27P40305 119 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-237ENST00000539504 C1orf185Q5T7R7 199 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 LINC01545Q5VT33 79 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 FBXL15Q9H469 300 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 INSIG2Q9Y5U4 225 aa8.97□□□□□ -0.97
SYNE1-237ENST00000539504 FOXE3Q13461 319 aa8.96□□□□□ -0.97
SYNE1-237ENST00000539504 DYNLRB1Q9NP97 96 aa8.96□□□□□ -0.97
SYNE1-237ENST00000539504 CRYGCP07315 174 aa8.96□□□□□ -0.98
SYNE1-237ENST00000539504 COX7A1P24310 79 aa8.96□□□□□ -0.98
SYNE1-237ENST00000539504 PSG8Q9UQ74 426 aa8.96□□□□□ -0.98
SYNE1-237ENST00000539504 S4R3C0 116 aa8.96□□□□□ -0.98
SYNE1-237ENST00000539504 SPAARA0A1B0GVQ0 90 aa8.96□□□□□ -0.98
SYNE1-237ENST00000539504 SCNM1Q9BWG6 230 aa8.96□□□□□ -0.98
SYNE1-237ENST00000539504 THYN1Q9P016 225 aa8.96□□□□□ -0.98
SYNE1-237ENST00000539504 H3BUT2 72 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 M0R3E3 92 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 FAM106CPP0CH98 169 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 FAM106AQ4KMX7 169 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 WFDC3Q8IUB2 231 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 MEGF9Q9H1U4 602 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 RAI1Q7Z5J4 1906 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-237ENST00000539504 PPBPP02775 128 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 NMUP48645 174 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 CACNG7P62955 275 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 DEFB124Q8NES8 71 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 NGBQ9NPG2 151 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 A6NDN8 102 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 D6R8Y8 96 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 TMEM178BH3BS89 294 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 FCN3O75636 299 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 ADIPOQQ15848 244 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 GTF2H5Q6ZYL4 71 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 TMEM133Q9H2Q1 129 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 COLQQ9Y215 455 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-237ENST00000539504 SIGLEC9Q9Y336 463 aa8.95□□□□□ -0.98
SYNE1-237ENST00000539504 F11RQ9Y624 299 aaKnown RBP8.95□□□□□ -0.98
SYNE1-237ENST00000539504 NPIPB6E9PJ23 425 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 IGLC1P0CG04 106 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 RIPPLY3P57055 190 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 LOXL1Q08397 574 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-237ENST00000539504 IGFL2Q6UWQ7 119 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 PPP1R27Q86WC6 154 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 PRELID3AQ96N28 172 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 BOD1L1Q8NFC6 3051 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 MALRD1Q5VYJ5 2156 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 SAP30O75446 220 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 IGHV1-8P0DP01 117 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 FCGR2BP31994 310 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-237ENST00000539504 PLA2G2CQ5R387 149 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 FAM71F2Q6NXP2 309 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 CTSZQ9UBR2 303 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 RABAC1Q9UI14 185 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 TMEM213A2RRL7 107 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 LOXP28300 417 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-237ENST00000539504 SEC11AP67812 179 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 C2orf91Q6ZV80 131 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 AMN1Q8IY45 258 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 GUCD1Q96NT3 240 aa8.94□□□□□ -0.98
SYNE1-237ENST00000539504 IGLV2-11P01706 119 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 IL4P05112 153 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 BSPH1Q075Z2 132 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 TM4SF20Q53R12 229 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 LINC00311Q8N616 119 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 A1L4Q6 167 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 TMEM189A5PLL7 270 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 M0R296 226 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 RPS20P60866 119 aaKnown RBP8.93□□□□□ -0.98
SYNE1-237ENST00000539504 LYZL1Q6UWQ5 148 aa8.93□□□□□ -0.98
SYNE1-237ENST00000539504 RPEQ96AT9 228 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms