RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 DEFB135Q30KP9 77 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 OR11H7Q8NGC8 314 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 MUC7Q8TAX7 377 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 RSG1Q9BU20 258 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 SLC25A31Q9H0C2 315 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 ARV1Q9H2C2 271 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 SLC25A22Q9H936 323 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 STARD9Q9P2P6 4700 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 ELOA3CA0A087WX78 387 aaPredicted RBP9.49□□□□□ -0.89
VPS28-216ENST00000533806 H3BMM0 161 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 OR5G3P0C626 314 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 GALR1P47211 349 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 MEOX2P50222 304 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 RAP2BP61225 183 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 BAXQ07812 192 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 RAB31Q13636 194 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 OPCMLQ14982 345 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 OXA1LQ15070 435 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 ACTL10Q5JWF8 245 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 SAMD13Q5VXD3 122 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 MORN5Q5VZ52 161 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 MIC13Q5XKP0 118 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 STHQ8IWL8 128 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 OR5C1Q8NGR4 320 aa9.49□□□□□ -0.89
VPS28-216ENST00000533806 TRAV8-2A0A0B4J237 113 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 UBE2L5PA0A1B0GUS4 154 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 C3orf84H3BNL1 204 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 MPDU1O75352 247 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 RPL7P18124 248 aaKnown RBP9.48□□□□□ -0.89
VPS28-216ENST00000533806 FCN2Q15485 313 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 RGS21Q2M5E4 152 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 GDF5OSQ5U4N7 250 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 LINC00305Q7Z4B0 112 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 S100A7AQ86SG5 101 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 GATAD1Q8WUU5 269 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 C20orf173Q96LM9 149 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 CLUHP3Q96NS8 147 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 DNAJC4Q9NNZ3 241 aa9.48□□□□□ -0.89
VPS28-216ENST00000533806 A0A087X0K7 114 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 CA1P00915 261 aaPredicted RBP9.47□□□□□ -0.89
VPS28-216ENST00000533806 PET100P0DJ07 73 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 SPP1P10451 314 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 HLA-DRB4P13762 266 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 C4BPBP20851 252 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 FGF7P21781 194 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 ID1P41134 155 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 DEFB1P60022 68 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 MORN3Q6PF18 240 aaPredicted RBP9.47□□□□□ -0.89
VPS28-216ENST00000533806 CSNK1G2-AS1Q8NCQ2 148 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 NPCDR1Q9BY65 106 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 MED28Q9H204 178 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 SAV1Q9H4B6 383 aaPredicted RBP9.47□□□□□ -0.89
VPS28-216ENST00000533806 SLC39A9Q9NUM3 307 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 MBD2Q9UBB5 411 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 HLA-DRB4X5D2U9 266 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 TENM2Q9NT68 2774 aa9.47□□□□□ -0.89
VPS28-216ENST00000533806 A8MTW9 85 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 COX7A2P2O60397 106 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 RPL12P30050 165 aaKnown RBP9.46□□□□□ -0.9
VPS28-216ENST00000533806 TMEM41BQ5BJD5 291 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 CASC10Q5T4H9 136 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 C10orf113Q5VZT2 155 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 FOXI2Q6ZQN5 318 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 Q6ZRG5 221 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 THAP6Q8TBB0 222 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 C16orf92Q96LL3 132 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 LINC00052Q96N35 136 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 WDR61Q9GZS3 305 aaKnown RBP9.46□□□□□ -0.9
VPS28-216ENST00000533806 RNF24Q9Y225 148 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 HSPB11Q9Y547 144 aa9.46□□□□□ -0.9
VPS28-216ENST00000533806 AGRNO00468 2067 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 A0A0J9YX75 114 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 IGLC2P0DOY2 106 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 B2MP61769 119 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 CLINT1Q14677 625 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 Q5BKY6 102 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 SPATA31B1PQ5VZV4 182 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 ATP5SQ99766 215 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 PXMP4Q9Y6I8 212 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 DYNC2H1Q8NCM8 4307 aaKnown RBP9.45□□□□□ -0.9
VPS28-216ENST00000533806 RYR3Q15413 4870 aa9.45□□□□□ -0.9
VPS28-216ENST00000533806 TRAV5A0A0B4J249 113 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 A0A0J9YWU9 116 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 F6UB75 175 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 ATF4P18848 351 aaPredicted RBP9.44□□□□□ -0.9
VPS28-216ENST00000533806 GCSAMLQ5JQS6 135 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 IGFL4Q6B9Z1 124 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 BPIFA4PQ86YQ2 179 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 OR1L4Q8NGR5 311 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 ASB13Q8WXK3 278 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 SAT2Q96F10 170 aaPredicted RBP9.44□□□□□ -0.9
VPS28-216ENST00000533806 PFDN5Q99471 154 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 RARRES2Q99969 163 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 WFDC1Q9HC57 220 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 RPRMQ9NS64 109 aa9.44□□□□□ -0.9
VPS28-216ENST00000533806 ZNF705EA8MWA4 302 aaPredicted RBP9.43□□□□□ -0.9
VPS28-216ENST00000533806 H3BQ15 152 aa9.43□□□□□ -0.9
VPS28-216ENST00000533806 GIPP09681 153 aaPredicted RBP9.43□□□□□ -0.9
VPS28-216ENST00000533806 CXCL2P19875 107 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms