RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 EIF5AP63241 154 aaKnown RBP11.6□□□□□ -0.55
CHMP4A-207ENST00000533523 THAP8Q8NA92 274 aa11.6□□□□□ -0.55
CHMP4A-207ENST00000533523 HSD17B11Q8NBQ5 300 aa11.6□□□□□ -0.55
CHMP4A-207ENST00000533523 STOML3Q8TAV4 291 aa11.6□□□□□ -0.55
CHMP4A-207ENST00000533523 ARV1Q9H2C2 271 aa11.6□□□□□ -0.55
CHMP4A-207ENST00000533523 IGKV1OR2-108A0A075B7D4 117 aa11.59□□□□□ -0.55
CHMP4A-207ENST00000533523 IGHV7-4-1A0A0J9YVY3 117 aa11.59□□□□□ -0.55
CHMP4A-207ENST00000533523 TEPPQ6URK8 271 aa11.59□□□□□ -0.55
CHMP4A-207ENST00000533523 ST8SIA2Q92186 375 aa11.59□□□□□ -0.55
CHMP4A-207ENST00000533523 MGST2Q99735 147 aa11.59□□□□□ -0.55
CHMP4A-207ENST00000533523 SMPXQ9UHP9 88 aa11.59□□□□□ -0.55
CHMP4A-207ENST00000533523 IGKV1D-37A0A075B6S9 117 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 ZFP92A6NM28 416 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 MPDU1O75352 247 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 CD5P06127 495 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 TPT1P13693 172 aaKnown RBP11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 ATP6V0CP27449 155 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 OR10J1P30954 320 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 LGALS9CQ6DKI2 356 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 APRG1Q8IVJ8 170 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 BAP18Q8IXM2 172 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 RSG1Q9BU20 258 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 RHPN1-AS1Q9BWJ2 59 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 NPCDR1Q9BY65 106 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 MAP6D1Q9H9H5 199 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 RFNGQ9Y644 331 aa11.58□□□□□ -0.56
CHMP4A-207ENST00000533523 AGRNO00468 2067 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 CHEK1O14757 476 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 AGPAT2O15120 278 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 IGLC1P0CG04 106 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 CAMLGP49069 296 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 RAB31Q13636 194 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 TIGITQ495A1 244 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 TOMM20LQ6UXN7 152 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 ZNF709Q8N972 641 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 ZNF414Q96IQ9 312 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 TRGV9Q99603 122 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 SH3BGRL3Q9H299 93 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 TMEM231Q9H6L2 316 aa11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 PUS1Q9Y606 427 aaKnown RBP eCLIP11.57□□□□□ -0.56
CHMP4A-207ENST00000533523 IGKV1-17P01599 117 aa11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 TFPI2P48307 235 aa11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 NANOS2P60321 138 aaKnown RBP11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 ZNF124Q15973 351 aa11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 CYP2G1PQ6ZSU1 146 aa11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 GNPNAT1Q96EK6 184 aaPredicted RBP11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 MUC4Q99102 2169 aa11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 SLC25A32Q9H2D1 315 aa11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 SLC45A2Q9UMX9 530 aa11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 TIMM9Q9Y5J7 89 aa11.56□□□□□ -0.56
CHMP4A-207ENST00000533523 IGKV3-7A0A075B6H7 116 aa11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 C17orf112F2Z3M2 114 aa11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 CFDP00746 253 aaPredicted RBP11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 ZNF90Q03938 601 aa11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 GATAD1Q8WUU5 269 aa11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 NARS2Q96I59 477 aaKnown RBP11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 METTL26Q96S19 204 aa11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 RNF2Q99496 336 aa11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 RARRES2Q99969 163 aa11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 PSMG3Q9BT73 122 aaPredicted RBP11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 ZFAND3Q9H8U3 227 aa11.55□□□□□ -0.56
CHMP4A-207ENST00000533523 IGHV3-49A0A0A0MS15 119 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 A0A1W2PS18 150 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 SPP1P10451 314 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 CMC4P56277 68 aaPredicted RBP11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 MIC13Q5XKP0 118 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 OR2G3Q8NGZ4 309 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 C11orf45Q8TAV5 145 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 TMED6Q8WW62 240 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 KRTAP4-5Q9BYR2 181 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 CSTL1Q9H114 145 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 C11orf68Q9H3H3 251 aaKnown RBP11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 KCNIP2Q9NS61 270 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 PXMP4Q9Y6I8 212 aa11.54□□□□□ -0.56
CHMP4A-207ENST00000533523 FABP1P07148 127 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 SEC11BP0C7V7 166 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 LINC00869P0C866 280 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 NPPCP23582 126 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 GATA2P23769 480 aaPredicted RBP11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 RPL29P47914 159 aaKnown RBP11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 YPEL3P61236 119 aaPredicted RBP11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 SELENOTP62341 195 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 PAFAH1B2P68402 229 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 FFAR4Q5NUL3 377 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 EIF5AL1Q6IS14 154 aaKnown RBP11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 ALKAL2Q6UX46 152 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 TMEM182Q6ZP80 229 aaPredicted RBP11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 BPIFCQ8NFQ6 507 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 OR11H2Q8NH07 326 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 Q8WTZ3 238 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 VSIRQ9H7M9 311 aa11.53□□□□□ -0.56
CHMP4A-207ENST00000533523 DEFB4AO15263 64 aa11.52□□□□□ -0.57
CHMP4A-207ENST00000533523 TOMM40O96008 361 aa11.52□□□□□ -0.57
CHMP4A-207ENST00000533523 CA1P00915 261 aaPredicted RBP11.52□□□□□ -0.57
CHMP4A-207ENST00000533523 RD3LP0DJH9 198 aa11.52□□□□□ -0.57
CHMP4A-207ENST00000533523 B2MP61769 119 aa11.52□□□□□ -0.57
CHMP4A-207ENST00000533523 PRR20EP86478 221 aa11.52□□□□□ -0.57
CHMP4A-207ENST00000533523 PRR20CP86479 221 aa11.52□□□□□ -0.57
CHMP4A-207ENST00000533523 PRR20DP86480 221 aa11.52□□□□□ -0.57
CHMP4A-207ENST00000533523 PRR20BP86481 221 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms