RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 C11orf45Q8TAV5 145 aa15.19■□□□□ 0.02
VPS28-203ENST00000524521 C17orf77Q96MU5 243 aa15.19■□□□□ 0.02
VPS28-203ENST00000524521 UHRF2Q96PU4 802 aa15.19■□□□□ 0.02
VPS28-203ENST00000524521 C1QTNF4Q9BXJ3 329 aa15.19■□□□□ 0.02
VPS28-203ENST00000524521 RYR3Q15413 4870 aa15.18■□□□□ 0.02
VPS28-203ENST00000524521 AGPAT2O15120 278 aa15.18■□□□□ 0.02
VPS28-203ENST00000524521 NANOS2P60321 138 aaKnown RBP15.18■□□□□ 0.02
VPS28-203ENST00000524521 FGL1Q08830 312 aa15.18■□□□□ 0.02
VPS28-203ENST00000524521 EBLN2Q6P2I7 272 aa15.18■□□□□ 0.02
VPS28-203ENST00000524521 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.18■□□□□ 0.02
VPS28-203ENST00000524521 S100A7AQ86SG5 101 aa15.18■□□□□ 0.02
VPS28-203ENST00000524521 OR4B1Q8NGF8 309 aa15.18■□□□□ 0.02
VPS28-203ENST00000524521 RPRMQ9NS64 109 aa15.18■□□□□ 0.02
VPS28-203ENST00000524521 IGHV4-28A0A0C4DH34 117 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 ZNF705EA8MWA4 302 aaPredicted RBP15.17■□□□□ 0.02
VPS28-203ENST00000524521 F6UB75 175 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 INMT-MINDY4F8WBC2 141 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 MIFP14174 115 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 FXYD7P58549 80 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 PATE2Q6UY27 113 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 ZNF546Q86UE3 836 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 Q8NAQ8 132 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 PHLDA1Q8WV24 401 aaPredicted RBP15.17■□□□□ 0.02
VPS28-203ENST00000524521 C20orf173Q96LM9 149 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 ARV1Q9H2C2 271 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 X6R8D5 127 aa15.17■□□□□ 0.02
VPS28-203ENST00000524521 DYNC2H1Q8NCM8 4307 aaKnown RBP15.17■□□□□ 0.02
VPS28-203ENST00000524521 SIX6O95475 246 aa15.16■□□□□ 0.02
VPS28-203ENST00000524521 RBMY1A1P0DJD3 496 aaKnown RBP15.16■□□□□ 0.02
VPS28-203ENST00000524521 RBMY1CP0DJD4 496 aa15.16■□□□□ 0.02
VPS28-203ENST00000524521 RPL7P18124 248 aaKnown RBP15.16■□□□□ 0.02
VPS28-203ENST00000524521 RBMY1FQ15415 496 aaKnown RBP15.16■□□□□ 0.02
VPS28-203ENST00000524521 SPATA31B1PQ5VZV4 182 aa15.16■□□□□ 0.02
VPS28-203ENST00000524521 MGST2Q99735 147 aa15.16■□□□□ 0.02
VPS28-203ENST00000524521 MFFQ9GZY8 342 aa15.16■□□□□ 0.02
VPS28-203ENST00000524521 LYRM2Q9NU23 88 aaPredicted RBP15.16■□□□□ 0.02
VPS28-203ENST00000524521 KLK5Q9Y337 293 aaPredicted RBP15.16■□□□□ 0.02
VPS28-203ENST00000524521 PRAF2O60831 178 aa15.15■□□□□ 0.02
VPS28-203ENST00000524521 DEFA1P59665 94 aa15.15■□□□□ 0.02
VPS28-203ENST00000524521 DEFA3P59666 94 aa15.15■□□□□ 0.02
VPS28-203ENST00000524521 RAB31Q13636 194 aa15.15■□□□□ 0.02
VPS28-203ENST00000524521 PXDC1Q5TGL8 231 aa15.15■□□□□ 0.02
VPS28-203ENST00000524521 FAM78BQ5VT40 261 aa15.15■□□□□ 0.02
VPS28-203ENST00000524521 IGFL4Q6B9Z1 124 aa15.15■□□□□ 0.02
VPS28-203ENST00000524521 UQCC1Q9NVA1 299 aa15.15■□□□□ 0.02
VPS28-203ENST00000524521 A0A0J9YX75 114 aa15.14■□□□□ 0.01
VPS28-203ENST00000524521 IGSF23A1L1A6 192 aa15.14■□□□□ 0.01
VPS28-203ENST00000524521 S100A11P31949 105 aa15.14■□□□□ 0.01
VPS28-203ENST00000524521 CAMLGP49069 296 aa15.14■□□□□ 0.01
VPS28-203ENST00000524521 SULT1A1P50225 295 aa15.14■□□□□ 0.01
VPS28-203ENST00000524521 TMEM252Q8N6L7 170 aa15.14■□□□□ 0.01
VPS28-203ENST00000524521 CLUHP3Q96NS8 147 aa15.14■□□□□ 0.01
VPS28-203ENST00000524521 COX7A2P2O60397 106 aa15.13■□□□□ 0.01
VPS28-203ENST00000524521 PSG9Q00887 426 aa15.13■□□□□ 0.01
VPS28-203ENST00000524521 LINC00305Q7Z4B0 112 aa15.13■□□□□ 0.01
VPS28-203ENST00000524521 STX12Q86Y82 276 aa15.13■□□□□ 0.01
VPS28-203ENST00000524521 LRRC20Q8TCA0 184 aa15.13■□□□□ 0.01
VPS28-203ENST00000524521 MARVELD1Q9BSK0 173 aa15.13■□□□□ 0.01
VPS28-203ENST00000524521 SLC35B3Q9H1N7 401 aa15.13■□□□□ 0.01
VPS28-203ENST00000524521 RNF24Q9Y225 148 aa15.13■□□□□ 0.01
VPS28-203ENST00000524521 TRAV8-2A0A0B4J237 113 aa15.12■□□□□ 0.01
VPS28-203ENST00000524521 RLN2P04090 185 aa15.12■□□□□ 0.01
VPS28-203ENST00000524521 HBG1P69891 147 aa15.12■□□□□ 0.01
VPS28-203ENST00000524521 HBG2P69892 147 aa15.12■□□□□ 0.01
VPS28-203ENST00000524521 RNF182Q8N6D2 247 aa15.12■□□□□ 0.01
VPS28-203ENST00000524521 WDR83OSQ9Y284 106 aa15.12■□□□□ 0.01
VPS28-203ENST00000524521 MIC13Q5XKP0 118 aa15.11■□□□□ 0.01
VPS28-203ENST00000524521 Q6ZRG5 221 aa15.11■□□□□ 0.01
VPS28-203ENST00000524521 ZNF709Q8N972 641 aa15.11■□□□□ 0.01
VPS28-203ENST00000524521 IGHV3OR16-12A0A075B7B8 117 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 ELOA3CA0A087WX78 387 aaPredicted RBP15.1■□□□□ 0.01
VPS28-203ENST00000524521 UBE2L5PA0A1B0GUS4 154 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 CYCSP99999 105 aaKnown RBP15.1■□□□□ 0.01
VPS28-203ENST00000524521 BAXQ07812 192 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 ATP6V1FQ16864 119 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 VWC2Q2TAL6 325 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 LRRC37A5PQ49AS3 106 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 C10orf113Q5VZT2 155 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 TMEM37Q8WXS4 190 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 NMES1Q9C002 83 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 DNAJC4Q9NNZ3 241 aa15.1■□□□□ 0.01
VPS28-203ENST00000524521 A0A087X0K7 114 aa15.09■□□□□ 0.01
VPS28-203ENST00000524521 ZNF705DP0CH99 300 aaPredicted RBP15.09■□□□□ 0.01
VPS28-203ENST00000524521 ZNF705BP0CI00 300 aaPredicted RBP15.09■□□□□ 0.01
VPS28-203ENST00000524521 ZNF738Q8NE65 137 aa15.09■□□□□ 0.01
VPS28-203ENST00000524521 HRH4Q9H3N8 390 aa15.09■□□□□ 0.01
VPS28-203ENST00000524521 E5RGE8 158 aa15.08■□□□□ 0
VPS28-203ENST00000524521 MRPS12O15235 138 aaKnown RBP15.08■□□□□ 0
VPS28-203ENST00000524521 SSNA1O43805 119 aa15.08■□□□□ 0
VPS28-203ENST00000524521 DUSP14O95147 198 aaKnown RBP15.08■□□□□ 0
VPS28-203ENST00000524521 LY6G6CO95867 125 aa15.08■□□□□ 0
VPS28-203ENST00000524521 SNRPCP09234 159 aaKnown RBP15.08■□□□□ 0
VPS28-203ENST00000524521 HLA-DMBP28068 263 aa15.08■□□□□ 0
VPS28-203ENST00000524521 PRR20EP86478 221 aa15.08■□□□□ 0
VPS28-203ENST00000524521 PRR20CP86479 221 aa15.08■□□□□ 0
VPS28-203ENST00000524521 PRR20DP86480 221 aa15.08■□□□□ 0
VPS28-203ENST00000524521 PRR20BP86481 221 aa15.08■□□□□ 0
VPS28-203ENST00000524521 PRR20AP86496 221 aa15.08■□□□□ 0
VPS28-203ENST00000524521 NHLH2Q02577 135 aa15.08■□□□□ 0
VPS28-203ENST00000524521 ZNF705AQ6ZN79 300 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms