RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 TAC3Q9UHF0 121 aa4.63□□□□□ -1.67
LSM1-202ENST00000520286 KLK12Q9UKR0 248 aa4.63□□□□□ -1.67
LSM1-202ENST00000520286 PTPRBP23467 1997 aa4.63□□□□□ -1.67
LSM1-202ENST00000520286 KNTC1P50748 2209 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 TRPM6Q9BX84 2022 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 HEATR5BQ9P2D3 2071 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 TRAV30A0A087WSZ9 112 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 A0A1W2PNU3 283 aaPredicted RBP4.62□□□□□ -1.67
LSM1-202ENST00000520286 C10orf142B7Z368 130 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 J3QT63 122 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 M0R1B8 84 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 M0R1X1 148 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 RBFOX2O43251 390 aaKnown RBP eCLIP4.62□□□□□ -1.67
LSM1-202ENST00000520286 ZNF207O43670 478 aaKnown RBP4.62□□□□□ -1.67
LSM1-202ENST00000520286 HRASP01112 189 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 CTSDP07339 412 aaPredicted RBP4.62□□□□□ -1.67
LSM1-202ENST00000520286 MMP7P09237 267 aaPredicted RBP4.62□□□□□ -1.67
LSM1-202ENST00000520286 HIST1H1DP16402 221 aaKnown RBP4.62□□□□□ -1.67
LSM1-202ENST00000520286 GZMHP20718 246 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 ATP6V0CP27449 155 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 ARF6P62330 175 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 RHOGP84095 191 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 KRTAP21-3Q3LHN1 58 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 RNASE13Q5GAN3 156 aaKnown RBP4.62□□□□□ -1.67
LSM1-202ENST00000520286 Q6ZSR6 202 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 CYP2G1PQ6ZSU1 146 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 C20orf196Q8IYI0 205 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 LRRC25Q8N386 305 aaPredicted RBP4.62□□□□□ -1.67
LSM1-202ENST00000520286 DRAM1Q8N682 238 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 OR4B1Q8NGF8 309 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 GPR119Q8TDV5 335 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 TNFRSF14Q92956 283 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 SLC25A44Q96H78 314 aaPredicted RBP4.62□□□□□ -1.67
LSM1-202ENST00000520286 ABHD14BQ96IU4 210 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 ADTRPQ96IZ2 230 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 C18orf15Q96N68 181 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 AMELYQ99218 206 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 TMEM106BQ9NUM4 274 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 MRPL27Q9P0M9 148 aaKnown RBP4.62□□□□□ -1.67
LSM1-202ENST00000520286 GSKIPQ9P0R6 139 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 AK3Q9UIJ7 227 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 MGAQ8IWI9 3026 aa4.62□□□□□ -1.67
LSM1-202ENST00000520286 DOCK9Q9BZ29 2069 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 PRRC2AP48634 2157 aaKnown RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 CABIN1Q9Y6J0 2220 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 TNRC6BQ9UPQ9 1833 aaKnown RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 IGKV1D-42A0A075B6H8 117 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 MAP1LC3B2A6NCE7 125 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 OR6C6A6NF89 314 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 ENSAO43768 121 aaKnown RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 OR2J2O76002 312 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 OR5G3P0C626 314 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 BCL2P10415 239 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 SRP14P37108 136 aaKnown RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 RAB38P57729 211 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 EIF3IQ13347 325 aaKnown RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 ENDOGQ14249 297 aaKnown RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 C1orf140Q5VVS0 124 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 Q5W150 140 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 CDRT4Q8N9R6 151 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 OR5H2Q8NGV7 314 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 MBD3L1Q8WWY6 194 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 GPR146Q96CH1 333 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 GNPNAT1Q96EK6 184 aaPredicted RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 ZNF514Q96K75 400 aaPredicted RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 MAP1LC3BQ9GZQ8 125 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 LPAR5Q9H1C0 372 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 LYRM2Q9NU23 88 aaPredicted RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 NAT8Q9UHE5 227 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 NXT1Q9UKK6 140 aaKnown RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 HHLA2Q9UM44 414 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 SLC7A11Q9UPY5 501 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 SLC22A13Q9Y226 551 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 LSM5Q9Y4Y9 91 aaKnown RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 YTHDF2Q9Y5A9 579 aaKnown RBP4.61□□□□□ -1.67
LSM1-202ENST00000520286 ZNF780BQ9Y6R6 833 aa4.61□□□□□ -1.67
LSM1-202ENST00000520286 GOLGA4Q13439 2230 aaKnown RBP4.6□□□□□ -1.67
LSM1-202ENST00000520286 IGHV3-72A0A0B4J1Y9 119 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 TRAV8-6A0A0B4J262 113 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 LOC107986453A0A1B0GWG9 222 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 IGSF23A1L1A6 192 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 CTXN2P0C2S0 81 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 ASAH2BP0C7U1 165 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 ZNF141Q15928 474 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 ZNF880Q6PDB4 577 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 TMEM144Q7Z5S9 345 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 SLC25A45Q8N413 288 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 SLC22A24Q8N4F4 322 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 ZNF738Q8NE65 137 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 UBALD1Q8TB05 177 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 CIRBP-AS1Q8TBR5 109 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 DOK4Q8TEW6 326 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 SMIM12Q96EX1 92 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 BTF3L4Q96K17 158 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 TSPAN32Q96QS1 320 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 VAMP8Q9BV40 100 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 C14orf166Q9Y224 244 aaKnown RBP4.6□□□□□ -1.67
LSM1-202ENST00000520286 MRPS16Q9Y3D3 137 aaKnown RBP4.6□□□□□ -1.67
LSM1-202ENST00000520286 R4GMQ9 66 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 ABCA12Q86UK0 2595 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms