RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 GPN1Q9HCN4 374 aaPredicted RBP17.92■□□□□ 0.46
UPF3A-209ENST00000492270 X6R8D5 127 aa17.92■□□□□ 0.46
UPF3A-209ENST00000492270 PLECQ15149 4684 aaKnown RBP17.92■□□□□ 0.46
UPF3A-209ENST00000492270 ALMS1Q8TCU4 4167 aa17.91■□□□□ 0.46
UPF3A-209ENST00000492270 F6UB75 175 aa17.91■□□□□ 0.46
UPF3A-209ENST00000492270 PVALBP20472 110 aaPredicted RBP17.91■□□□□ 0.46
UPF3A-209ENST00000492270 MEOX2P50222 304 aa17.91■□□□□ 0.46
UPF3A-209ENST00000492270 FOXI2Q6ZQN5 318 aa17.91■□□□□ 0.46
UPF3A-209ENST00000492270 GPR82Q96P67 336 aa17.91■□□□□ 0.46
UPF3A-209ENST00000492270 LYRM2Q9NU23 88 aaPredicted RBP17.91■□□□□ 0.46
UPF3A-209ENST00000492270 XCL2Q9UBD3 114 aa17.91■□□□□ 0.46
UPF3A-209ENST00000492270 IGSF23A1L1A6 192 aa17.9■□□□□ 0.46
UPF3A-209ENST00000492270 ZNF705EA8MWA4 302 aaPredicted RBP17.9■□□□□ 0.46
UPF3A-209ENST00000492270 INMT-MINDY4F8WBC2 141 aa17.9■□□□□ 0.46
UPF3A-209ENST00000492270 GOSR2O14653 212 aa17.9■□□□□ 0.46
UPF3A-209ENST00000492270 FXYD7P58549 80 aa17.9■□□□□ 0.46
UPF3A-209ENST00000492270 NANOS2P60321 138 aaKnown RBP17.9■□□□□ 0.46
UPF3A-209ENST00000492270 ZNF546Q86UE3 836 aa17.9■□□□□ 0.46
UPF3A-209ENST00000492270 IGHV4-28A0A0C4DH34 117 aa17.89■□□□□ 0.45
UPF3A-209ENST00000492270 NUPR2A6NF83 97 aa17.89■□□□□ 0.45
UPF3A-209ENST00000492270 RBMY1A1P0DJD3 496 aaKnown RBP17.89■□□□□ 0.45
UPF3A-209ENST00000492270 RBMY1CP0DJD4 496 aa17.89■□□□□ 0.45
UPF3A-209ENST00000492270 S100A7P31151 101 aa17.89■□□□□ 0.45
UPF3A-209ENST00000492270 RBMY1FQ15415 496 aaKnown RBP17.89■□□□□ 0.45
UPF3A-209ENST00000492270 IGFL4Q6B9Z1 124 aa17.89■□□□□ 0.45
UPF3A-209ENST00000492270 ARV1Q9H2C2 271 aa17.89■□□□□ 0.45
UPF3A-209ENST00000492270 PRAF2O60831 178 aa17.88■□□□□ 0.45
UPF3A-209ENST00000492270 JTBO76095 146 aa17.88■□□□□ 0.45
UPF3A-209ENST00000492270 NUTF2P61970 127 aaKnown RBP17.88■□□□□ 0.45
UPF3A-209ENST00000492270 FGL1Q08830 312 aa17.88■□□□□ 0.45
UPF3A-209ENST00000492270 SAMD13Q5VXD3 122 aa17.88■□□□□ 0.45
UPF3A-209ENST00000492270 CEMP1Q6PRD7 247 aaPredicted RBP17.88■□□□□ 0.45
UPF3A-209ENST00000492270 TMEM252Q8N6L7 170 aa17.88■□□□□ 0.45
UPF3A-209ENST00000492270 OR4B1Q8NGF8 309 aa17.88■□□□□ 0.45
UPF3A-209ENST00000492270 TRAV8-2A0A0B4J237 113 aa17.87■□□□□ 0.45
UPF3A-209ENST00000492270 SULT1A1P50225 295 aa17.87■□□□□ 0.45
UPF3A-209ENST00000492270 RNF182Q8N6D2 247 aa17.87■□□□□ 0.45
UPF3A-209ENST00000492270 C11orf45Q8TAV5 145 aa17.87■□□□□ 0.45
UPF3A-209ENST00000492270 MARVELD1Q9BSK0 173 aa17.87■□□□□ 0.45
UPF3A-209ENST00000492270 C1QTNF4Q9BXJ3 329 aa17.87■□□□□ 0.45
UPF3A-209ENST00000492270 RPRMQ9NS64 109 aa17.87■□□□□ 0.45
UPF3A-209ENST00000492270 DNAH1Q9P2D7 4330 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 A0A0J9YX75 114 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 MIFP14174 115 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 RPL7P18124 248 aaKnown RBP17.86■□□□□ 0.45
UPF3A-209ENST00000492270 CAMLGP49069 296 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 DEFA1P59665 94 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 DEFA3P59666 94 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 FAM78BQ5VT40 261 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 ZNF709Q8N972 641 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 PHLDA1Q8WV24 401 aaPredicted RBP17.86■□□□□ 0.45
UPF3A-209ENST00000492270 SLC35B3Q9H1N7 401 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 UQCC1Q9NVA1 299 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 HYDINQ4G0P3 5121 aa17.86■□□□□ 0.45
UPF3A-209ENST00000492270 UBE2L5PA0A1B0GUS4 154 aa17.85■□□□□ 0.45
UPF3A-209ENST00000492270 VWC2Q2TAL6 325 aa17.85■□□□□ 0.45
UPF3A-209ENST00000492270 EBLN2Q6P2I7 272 aa17.85■□□□□ 0.45
UPF3A-209ENST00000492270 WDR83OSQ9Y284 106 aa17.85■□□□□ 0.45
UPF3A-209ENST00000492270 MRPS12O15235 138 aaKnown RBP17.84■□□□□ 0.45
UPF3A-209ENST00000492270 PXDC1Q5TGL8 231 aa17.84■□□□□ 0.45
UPF3A-209ENST00000492270 MORN5Q5VZ52 161 aa17.84■□□□□ 0.45
UPF3A-209ENST00000492270 MIC13Q5XKP0 118 aa17.84■□□□□ 0.45
UPF3A-209ENST00000492270 LINC00305Q7Z4B0 112 aa17.84■□□□□ 0.45
UPF3A-209ENST00000492270 STX12Q86Y82 276 aa17.84■□□□□ 0.45
UPF3A-209ENST00000492270 TMEM37Q8WXS4 190 aa17.84■□□□□ 0.45
UPF3A-209ENST00000492270 ELOA3CA0A087WX78 387 aaPredicted RBP17.83■□□□□ 0.44
UPF3A-209ENST00000492270 COX7A2P2O60397 106 aa17.83■□□□□ 0.44
UPF3A-209ENST00000492270 HLA-DMBP28068 263 aa17.83■□□□□ 0.44
UPF3A-209ENST00000492270 LRRC37A5PQ49AS3 106 aa17.83■□□□□ 0.44
UPF3A-209ENST00000492270 SPATA31B1PQ5VZV4 182 aa17.83■□□□□ 0.44
UPF3A-209ENST00000492270 CLUHP3Q96NS8 147 aa17.83■□□□□ 0.44
UPF3A-209ENST00000492270 NMES1Q9C002 83 aa17.83■□□□□ 0.44
UPF3A-209ENST00000492270 OR5AC2Q9NZP5 309 aa17.83■□□□□ 0.44
UPF3A-209ENST00000492270 A0A087X0K7 114 aa17.82■□□□□ 0.44
UPF3A-209ENST00000492270 S100A11P31949 105 aa17.82■□□□□ 0.44
UPF3A-209ENST00000492270 BAXQ07812 192 aa17.82■□□□□ 0.44
UPF3A-209ENST00000492270 S100A7AQ86SG5 101 aa17.82■□□□□ 0.44
UPF3A-209ENST00000492270 MFFQ9GZY8 342 aa17.82■□□□□ 0.44
UPF3A-209ENST00000492270 H0YIZ8 118 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 SNRPCP09234 159 aaKnown RBP17.81■□□□□ 0.44
UPF3A-209ENST00000492270 ZNF705DP0CH99 300 aaPredicted RBP17.81■□□□□ 0.44
UPF3A-209ENST00000492270 ZNF705BP0CI00 300 aaPredicted RBP17.81■□□□□ 0.44
UPF3A-209ENST00000492270 PRB4P10163 310 aaPredicted RBP17.81■□□□□ 0.44
UPF3A-209ENST00000492270 H2BFSP57053 126 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 HBG1P69891 147 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 HBG2P69892 147 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 PRR20EP86478 221 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 PRR20CP86479 221 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 PRR20DP86480 221 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 PRR20BP86481 221 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 PRR20AP86496 221 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 PSG9Q00887 426 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 NHLH2Q02577 135 aa17.81■□□□□ 0.44
UPF3A-209ENST00000492270 ZNF705AQ6ZN79 300 aaPredicted RBP17.81■□□□□ 0.44
UPF3A-209ENST00000492270 A8MTW9 85 aa17.8■□□□□ 0.44
UPF3A-209ENST00000492270 RAB31Q13636 194 aa17.8■□□□□ 0.44
UPF3A-209ENST00000492270 C10orf113Q5VZT2 155 aa17.8■□□□□ 0.44
UPF3A-209ENST00000492270 KLK5Q9Y337 293 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-209ENST00000492270 IGHV3OR16-12A0A075B7B8 117 aa17.79■□□□□ 0.44
UPF3A-209ENST00000492270 SSNA1O43805 119 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms