RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 SRP14P37108 136 aaKnown RBP0.62□□□□□ -2.31
CPSF3-205ENST00000489629 LYRM7Q5U5X0 104 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.62□□□□□ -2.31
CPSF3-205ENST00000489629 PHF13Q86YI8 300 aaPredicted RBP0.62□□□□□ -2.31
CPSF3-205ENST00000489629 LINC00471Q8N535 108 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 SLC30A7Q8NEW0 376 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 NEK7Q8TDX7 302 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 LYSMD1Q96S90 227 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 IMUPQ9GZP8 106 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 MIXL1Q9H2W2 232 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 MED9Q9NWA0 146 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 PYCARDQ9ULZ3 195 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 SOX21Q9Y651 276 aaPredicted RBP0.62□□□□□ -2.31
CPSF3-205ENST00000489629 NHSL1Q5SYE7 1610 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 EPPK1P58107 5090 aaKnown RBP0.62□□□□□ -2.31
CPSF3-205ENST00000489629 CSMD1Q96PZ7 3565 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 KMT2CQ8NEZ4 4911 aaKnown RBP0.62□□□□□ -2.31
CPSF3-205ENST00000489629 ALPK3Q96L96 1907 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 UBR5O95071 2799 aaPredicted RBP0.62□□□□□ -2.31
CPSF3-205ENST00000489629 SMARCA2P51531 1590 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 SPG11Q96JI7 2443 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 SPEGQ15772 3267 aa0.62□□□□□ -2.31
CPSF3-205ENST00000489629 EP400Q96L91 3159 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 TANC2Q9HCD6 1990 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 TTC28Q96AY4 2481 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 LRRK2Q5S007 2527 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 IGKV3-7A0A075B6H7 116 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 IGKV2-40A0A087WW87 121 aaPredicted RBP0.61□□□□□ -2.31
CPSF3-205ENST00000489629 TRBV6-8A0A0A6YYG3 113 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 TRAV12-1A0A0B4J245 112 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 ODAMA1E959 279 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 C7orf71A4D174 169 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 G3V2T6 193 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 NDUFB3O43676 98 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 SULT1B1O43704 296 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 TIMM17BO60830 172 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 IFNA7P01567 189 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 IGKV2D-40P01614 121 aaPredicted RBP0.61□□□□□ -2.31
CPSF3-205ENST00000489629 CXCL1P09341 107 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 BAALC-AS2P0C853 105 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 NFYBP25208 207 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 BRS3P32247 399 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 PHBP35232 272 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 ZNF93P35789 620 aaPredicted RBP0.61□□□□□ -2.31
CPSF3-205ENST00000489629 ROMO1P60602 79 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 MSMO1Q15800 293 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 LTC4SQ16873 150 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 SPANXN5Q5MJ07 72 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 AKR1C8PQ5T2L2 129 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 C22orf39Q6P5X5 142 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 PATE2Q6UY27 113 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 DEFB132Q7Z7B7 95 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 TMED4Q7Z7H5 227 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 RPS19BP1Q86WX3 136 aaKnown RBP0.61□□□□□ -2.31
CPSF3-205ENST00000489629 CLECL1Q8IZS7 167 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 GPX7Q96SL4 187 aaPredicted RBP0.61□□□□□ -2.31
CPSF3-205ENST00000489629 SERPINI1Q99574 410 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 SH3BGRL3Q9H299 93 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 IL20Q9NYY1 176 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 HS3ST2Q9Y278 367 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 SLC35A3Q9Y2D2 325 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 CHCHD2Q9Y6H1 151 aaPredicted RBP0.61□□□□□ -2.31
CPSF3-205ENST00000489629 CEP250Q9BV73 2442 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 TECTAO75443 2155 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 HERC1Q15751 4861 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 ZDBF2Q9HCK1 2354 aa0.61□□□□□ -2.31
CPSF3-205ENST00000489629 CENPFP49454 3210 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 TOP2BQ02880 1626 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 USP34Q70CQ2 3546 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 FLNAP21333 2647 aaKnown RBP0.6□□□□□ -2.31
CPSF3-205ENST00000489629 IGSF10Q6WRI0 2623 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 RYR2Q92736 4967 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 TENM4Q6N022 2769 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 TEX15Q9BXT5 2789 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 PIEZO2Q9H5I5 2752 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 DNAH12Q6ZR08 3092 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 EML5Q05BV3 1969 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 DUXBA0A1W2PPF3 345 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 H7C1C5 153 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 K7ERJ3 54 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 NDUFC2O95298 119 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 IGLV1-51P01701 117 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 DYNLT3P51808 116 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 LCN6P62502 163 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 RHOGP84095 191 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 C1orf137Q5JT78 98 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 LINC00301Q8NCQ3 95 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 OR10K1Q8NGX5 313 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 OR2T10Q8NGZ9 312 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 OR13C6PQ8NH95 151 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 SFT2D1Q8WV19 159 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 ZHX1-C8orf76Q96EF9 292 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 NPCDR1Q9BY65 106 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 TRABDQ9H4I3 376 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 LYRM2Q9NU23 88 aaPredicted RBP0.6□□□□□ -2.31
CPSF3-205ENST00000489629 OR5AC2Q9NZP5 309 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 SSR3Q9UNL2 185 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 RNF11Q9Y3C5 154 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 NCOR1O75376 2440 aa0.6□□□□□ -2.31
CPSF3-205ENST00000489629 MGAMO43451 1857 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms