RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 ZNF98A6NK75 572 aa7.77□□□□□ -1.17
SKA1-204ENST00000488454 DNASE2O00115 360 aaPredicted RBP7.77□□□□□ -1.17
SKA1-204ENST00000488454 BCL2L11O43521 198 aa7.77□□□□□ -1.17
SKA1-204ENST00000488454 CD300CQ08708 224 aa7.77□□□□□ -1.17
SKA1-204ENST00000488454 ACOT6Q3I5F7 207 aaPredicted RBP7.77□□□□□ -1.17
SKA1-204ENST00000488454 C16orf54Q6UWD8 224 aa7.77□□□□□ -1.17
SKA1-204ENST00000488454 LINC00305Q7Z4B0 112 aa7.77□□□□□ -1.17
SKA1-204ENST00000488454 GATAD1Q8WUU5 269 aa7.77□□□□□ -1.17
SKA1-204ENST00000488454 KRTAP4-12Q9BQ66 201 aa7.77□□□□□ -1.17
SKA1-204ENST00000488454 ZNF471Q9BX82 626 aaPredicted RBP7.77□□□□□ -1.17
SKA1-204ENST00000488454 SLC25A39Q9BZJ4 359 aaPredicted RBP7.77□□□□□ -1.17
SKA1-204ENST00000488454 SLC25A22Q9H936 323 aa7.77□□□□□ -1.17
SKA1-204ENST00000488454 C19orf73Q9NVV2 129 aa7.77□□□□□ -1.17
SKA1-204ENST00000488454 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.77□□□□□ -1.17
SKA1-204ENST00000488454 ZNF785A8K8V0 405 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 TSPAN4O14817 238 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 MBP02144 154 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 ATP6V0CP27449 155 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 GALR1P47211 349 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 SERF2P84101 59 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 LGALSLQ3ZCW2 172 aaPredicted RBP7.76□□□□□ -1.17
SKA1-204ENST00000488454 PATE2Q6UY27 113 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 SIGLEC15Q6ZMC9 328 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 TMEM61Q8N0U2 210 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 TMEM37Q8WXS4 190 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 GPR82Q96P67 336 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 UHRF2Q96PU4 802 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 PSMG3Q9BT73 122 aaPredicted RBP7.76□□□□□ -1.17
SKA1-204ENST00000488454 SHANK2-AS3Q9BTD1 123 aa7.76□□□□□ -1.17
SKA1-204ENST00000488454 ZNF256Q9Y2P7 627 aaPredicted RBP7.76□□□□□ -1.17
SKA1-204ENST00000488454 A0A1W2PPV4 95 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 IZUMO1RA6ND01 250 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 OR4C46A6NHA9 309 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 H3BRN7 92 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 GP9P14770 177 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 RPL7P18124 248 aaKnown RBP7.75□□□□□ -1.17
SKA1-204ENST00000488454 EGFEM1PQ0D2K5 195 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 FAM78BQ5VT40 261 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 FAM90A2PQ658T7 463 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 GTSCR1Q86UQ5 136 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 GBGT1Q8N5D6 347 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 OR2G3Q8NGZ4 309 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 GLMPQ8WWB7 406 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 SPAG8Q99932 426 aaPredicted RBP7.75□□□□□ -1.17
SKA1-204ENST00000488454 SCRT1Q9BWW7 348 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 SLC25A32Q9H2D1 315 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 CYTL1Q9NRR1 136 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 VWFP04275 2813 aa7.75□□□□□ -1.17
SKA1-204ENST00000488454 NOTCH3Q9UM47 2321 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 TPT1P13693 172 aaKnown RBP7.74□□□□□ -1.17
SKA1-204ENST00000488454 ATF4P18848 351 aaPredicted RBP7.74□□□□□ -1.17
SKA1-204ENST00000488454 M6PRP20645 277 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 TFPI2P48307 235 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 CMC4P56277 68 aaPredicted RBP7.74□□□□□ -1.17
SKA1-204ENST00000488454 KRTAP10-11P60412 298 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 RHOBP62745 196 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 BEAN1Q3B7T3 259 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 GCSAMLQ5JQS6 135 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 LEMD1Q68G75 181 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 EIF5AL1Q6IS14 154 aaKnown RBP7.74□□□□□ -1.17
SKA1-204ENST00000488454 BPIFA4PQ86YQ2 179 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 STXBP6Q8NFX7 210 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 OR10G4Q8NGN3 311 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 OR10G9Q8NGN4 311 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 OR10G7Q8NGN6 311 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 MRPL32Q9BYC8 188 aaKnown RBP7.74□□□□□ -1.17
SKA1-204ENST00000488454 SH3BGRL3Q9H299 93 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 MS4A6AQ9H2W1 248 aa7.74□□□□□ -1.17
SKA1-204ENST00000488454 TRAV2A0A0B4J234 112 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 TAS2R45P59539 299 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 AKR1C8PQ5T2L2 129 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 KPRPQ5T749 579 aaPredicted RBP7.73□□□□□ -1.17
SKA1-204ENST00000488454 SAMD13Q5VXD3 122 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 SLC51BQ86UW2 128 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 BAP18Q8IXM2 172 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 C9orf62Q8N4C0 152 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 NRN1Q9NPD7 142 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 FUT9Q9Y231 359 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 RFNGQ9Y644 331 aa7.73□□□□□ -1.17
SKA1-204ENST00000488454 TRAV5A0A0B4J249 113 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 SEC11BP0C7V7 166 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 SPP1P10451 314 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 ID1P41134 155 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 MEOX2P50222 304 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 NKX2-5P52952 324 aaPredicted RBP7.72□□□□□ -1.17
SKA1-204ENST00000488454 CD81P60033 236 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 TMEM41BQ5BJD5 291 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 FAM122CQ6P4D5 195 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 MIR17HGQ75NE6 70 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 KRTAP19-1Q8IUB9 90 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 LRRC20Q8TCA0 184 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 PRR25Q96S07 402 aa7.72□□□□□ -1.17
SKA1-204ENST00000488454 ACTR3CQ9C0K3 210 aaPredicted RBP7.72□□□□□ -1.17
SKA1-204ENST00000488454 SEPSECSQ9HD40 501 aaKnown RBP7.72□□□□□ -1.17
SKA1-204ENST00000488454 RAB2AP61019 212 aa7.71□□□□□ -1.18
SKA1-204ENST00000488454 SNRPD3P62318 126 aaKnown RBP7.71□□□□□ -1.18
SKA1-204ENST00000488454 MORN5Q5VZ52 161 aa7.71□□□□□ -1.18
SKA1-204ENST00000488454 STOML3Q8TAV4 291 aa7.71□□□□□ -1.18
SKA1-204ENST00000488454 C16orf92Q96LL3 132 aa7.71□□□□□ -1.18
SKA1-204ENST00000488454 OR51M1Q9H341 326 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms