RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 LINC00052Q96N35 136 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 GPR82Q96P67 336 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 RSG1Q9BU20 258 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 UBE2CO00762 179 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 ATF4P18848 351 aaPredicted RBP10.86□□□□□ -0.67
USP4-212ENST00000486549 FGL1Q08830 312 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 OPCMLQ14982 345 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 OXA1LQ15070 435 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 Q6ZRG5 221 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 LINC00305Q7Z4B0 112 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 S100A7AQ86SG5 101 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 C16orf92Q96LL3 132 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 OVOL2Q9BRP0 275 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 CSTL1Q9H114 145 aa10.86□□□□□ -0.67
USP4-212ENST00000486549 SOCS3O14543 225 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 SPRY2O43597 315 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 CA1P00915 261 aaPredicted RBP10.85□□□□□ -0.67
USP4-212ENST00000486549 RPL7P18124 248 aaKnown RBP10.85□□□□□ -0.67
USP4-212ENST00000486549 RPL12P30050 165 aaKnown RBP10.85□□□□□ -0.67
USP4-212ENST00000486549 PSMB3P49720 205 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 DEFB1P60022 68 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 B2MP61769 119 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 PRR20EP86478 221 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 PRR20CP86479 221 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 PRR20DP86480 221 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 PRR20BP86481 221 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 PRR20AP86496 221 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 C10orf113Q5VZT2 155 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 Q6ZWC4 215 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 TRPT1Q86TN4 253 aaKnown RBP10.85□□□□□ -0.67
USP4-212ENST00000486549 TMEM37Q8WXS4 190 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 NPCDR1Q9BY65 106 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 SMIM3Q9BZL3 60 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 SEPSECSQ9HD40 501 aaKnown RBP10.85□□□□□ -0.67
USP4-212ENST00000486549 HSPB11Q9Y547 144 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 PXMP4Q9Y6I8 212 aa10.85□□□□□ -0.67
USP4-212ENST00000486549 RPL29P47914 159 aaKnown RBP10.84□□□□□ -0.67
USP4-212ENST00000486549 MEOX2P50222 304 aa10.84□□□□□ -0.67
USP4-212ENST00000486549 IL17DQ8TAD2 202 aa10.84□□□□□ -0.67
USP4-212ENST00000486549 C17orf77Q96MU5 243 aa10.84□□□□□ -0.67
USP4-212ENST00000486549 EDA2RQ9HAV5 297 aa10.84□□□□□ -0.67
USP4-212ENST00000486549 SLC39A9Q9NUM3 307 aa10.84□□□□□ -0.67
USP4-212ENST00000486549 ELOA3CA0A087WX78 387 aaPredicted RBP10.83□□□□□ -0.68
USP4-212ENST00000486549 ISLRO14498 428 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 MPDU1O75352 247 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 CASC10Q5T4H9 136 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 SAMD13Q5VXD3 122 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 MORN5Q5VZ52 161 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 IGFL4Q6B9Z1 124 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 OR1L4Q8NGR5 311 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 RNF183Q96D59 192 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 C20orf173Q96LM9 149 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 PFDN5Q99471 154 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 ATP5SQ99766 215 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 DNAJC4Q9NNZ3 241 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 RNF24Q9Y225 148 aa10.83□□□□□ -0.68
USP4-212ENST00000486549 IGKV3-20P01619 116 aa10.82□□□□□ -0.68
USP4-212ENST00000486549 SNRPCP09234 159 aaKnown RBP10.82□□□□□ -0.68
USP4-212ENST00000486549 GIPP09681 153 aaPredicted RBP10.82□□□□□ -0.68
USP4-212ENST00000486549 GDF5OSQ5U4N7 250 aa10.82□□□□□ -0.68
USP4-212ENST00000486549 WDR61Q9GZS3 305 aaKnown RBP10.82□□□□□ -0.68
USP4-212ENST00000486549 TP53TG1Q9Y2A0 90 aa10.82□□□□□ -0.68
USP4-212ENST00000486549 TRAV5A0A0B4J249 113 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 F6UB75 175 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 SPP1P10451 314 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 HLA-DRB4P13762 266 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 C4BPBP20851 252 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 GCSAMLQ5JQS6 135 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 MORN3Q6PF18 240 aaPredicted RBP10.81□□□□□ -0.68
USP4-212ENST00000486549 BPIFA4PQ86YQ2 179 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 RNF182Q8N6D2 247 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 ZNF709Q8N972 641 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 LRRC20Q8TCA0 184 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 CHAC2Q8WUX2 184 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 SAV1Q9H4B6 383 aaPredicted RBP10.81□□□□□ -0.68
USP4-212ENST00000486549 RPRMQ9NS64 109 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 HLA-DRB4X5D2U9 266 aa10.81□□□□□ -0.68
USP4-212ENST00000486549 DNAH7Q8WXX0 4024 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 A0A087X0K7 114 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 TRAV8-2A0A0B4J237 113 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 C17orf112F2Z3M2 114 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 H3BMM0 161 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 H3BTX0 84 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 MRPS12O15235 138 aaKnown RBP10.8□□□□□ -0.68
USP4-212ENST00000486549 IFNA5P01569 189 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 Q5BKY6 102 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 FOXI2Q6ZQN5 318 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 OR4B1Q8NGF8 309 aa10.8□□□□□ -0.68
USP4-212ENST00000486549 EBLN2Q6P2I7 272 aa10.79□□□□□ -0.68
USP4-212ENST00000486549 SCGB1C1Q8TD33 95 aa10.79□□□□□ -0.68
USP4-212ENST00000486549 GATAD1Q8WUU5 269 aa10.79□□□□□ -0.68
USP4-212ENST00000486549 ASB13Q8WXK3 278 aa10.79□□□□□ -0.68
USP4-212ENST00000486549 WFDC1Q9HC57 220 aa10.79□□□□□ -0.68
USP4-212ENST00000486549 KCNIP2Q9NS61 270 aa10.79□□□□□ -0.68
USP4-212ENST00000486549 CLEC5AQ9NY25 188 aa10.79□□□□□ -0.68
USP4-212ENST00000486549 A0A0J9YWU9 116 aa10.78□□□□□ -0.68
USP4-212ENST00000486549 GIG44P09565 113 aaPredicted RBP10.78□□□□□ -0.68
USP4-212ENST00000486549 PRB4P10163 310 aaPredicted RBP10.78□□□□□ -0.68
USP4-212ENST00000486549 HLA-DMBP28068 263 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms