RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 NHLH2Q02577 135 aa11.73□□□□□ -0.53
UPF3A-208ENST00000484246 PATE2Q6UY27 113 aa11.73□□□□□ -0.53
UPF3A-208ENST00000484246 OR5C1Q8NGR4 320 aa11.73□□□□□ -0.53
UPF3A-208ENST00000484246 SCRT1Q9BWW7 348 aa11.73□□□□□ -0.53
UPF3A-208ENST00000484246 ARV1Q9H2C2 271 aa11.73□□□□□ -0.53
UPF3A-208ENST00000484246 DOK5Q9P104 306 aa11.73□□□□□ -0.53
UPF3A-208ENST00000484246 HSPB11Q9Y547 144 aa11.73□□□□□ -0.53
UPF3A-208ENST00000484246 ZNF688P0C7X2 276 aa11.72□□□□□ -0.53
UPF3A-208ENST00000484246 RPL7P18124 248 aaKnown RBP11.72□□□□□ -0.53
UPF3A-208ENST00000484246 PSMB3P49720 205 aa11.72□□□□□ -0.53
UPF3A-208ENST00000484246 SNRPD3P62318 126 aaKnown RBP11.72□□□□□ -0.53
UPF3A-208ENST00000484246 ZNF124Q15973 351 aa11.72□□□□□ -0.53
UPF3A-208ENST00000484246 Q6ZWC4 215 aa11.72□□□□□ -0.53
UPF3A-208ENST00000484246 WWC2-AS2Q96NR7 200 aa11.72□□□□□ -0.53
UPF3A-208ENST00000484246 ARL6Q9H0F7 186 aa11.72□□□□□ -0.53
UPF3A-208ENST00000484246 TP53TG1Q9Y2A0 90 aa11.72□□□□□ -0.53
UPF3A-208ENST00000484246 COL7A1Q02388 2944 aa11.72□□□□□ -0.53
UPF3A-208ENST00000484246 ISLRO14498 428 aa11.71□□□□□ -0.53
UPF3A-208ENST00000484246 OR5G3P0C626 314 aa11.71□□□□□ -0.53
UPF3A-208ENST00000484246 FGF7P21781 194 aa11.71□□□□□ -0.53
UPF3A-208ENST00000484246 C17orf77Q96MU5 243 aa11.71□□□□□ -0.53
UPF3A-208ENST00000484246 NPCDR1Q9BY65 106 aa11.71□□□□□ -0.53
UPF3A-208ENST00000484246 A0A087X0K7 114 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 COX7A2P2O60397 106 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 RPL12P30050 165 aaKnown RBP11.7□□□□□ -0.54
UPF3A-208ENST00000484246 B2MP61769 119 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 FGL1Q08830 312 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 MIC13Q5XKP0 118 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 LEMD1Q68G75 181 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 Q6ZRG5 221 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 TRPT1Q86TN4 253 aaKnown RBP11.7□□□□□ -0.54
UPF3A-208ENST00000484246 OR1L4Q8NGR5 311 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 THAP6Q8TBB0 222 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 TMEM37Q8WXS4 190 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 UHRF2Q96PU4 802 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 PFDN5Q99471 154 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 ATP5SQ99766 215 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 WDR61Q9GZS3 305 aaKnown RBP11.7□□□□□ -0.54
UPF3A-208ENST00000484246 SLC25A22Q9H936 323 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 KCNIP2Q9NS61 270 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 SLC39A9Q9NUM3 307 aa11.7□□□□□ -0.54
UPF3A-208ENST00000484246 STAB2Q8WWQ8 2551 aa11.69□□□□□ -0.54
UPF3A-208ENST00000484246 MRPS12O15235 138 aaKnown RBP11.69□□□□□ -0.54
UPF3A-208ENST00000484246 ID1P41134 155 aa11.69□□□□□ -0.54
UPF3A-208ENST00000484246 CLINT1Q14677 625 aa11.69□□□□□ -0.54
UPF3A-208ENST00000484246 PSMG4Q5JS54 123 aa11.69□□□□□ -0.54
UPF3A-208ENST00000484246 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.69□□□□□ -0.54
UPF3A-208ENST00000484246 PARD6GQ9BYG4 376 aaPredicted RBP11.69□□□□□ -0.54
UPF3A-208ENST00000484246 PXMP4Q9Y6I8 212 aa11.69□□□□□ -0.54
UPF3A-208ENST00000484246 RPL35AP18077 110 aaKnown RBP11.68□□□□□ -0.54
UPF3A-208ENST00000484246 CXCL2P19875 107 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 C10orf113Q5VZT2 155 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 LINC00305Q7Z4B0 112 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 STHQ8IWL8 128 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 GATAD1Q8WUU5 269 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 CLUHP3Q96NS8 147 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 AQP10Q96PS8 301 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 CSTL1Q9H114 145 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 EDA2RQ9HAV5 297 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 RETNQ9HD89 108 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 DNAJC4Q9NNZ3 241 aa11.68□□□□□ -0.54
UPF3A-208ENST00000484246 SPP1P10451 314 aa11.67□□□□□ -0.54
UPF3A-208ENST00000484246 TMEM41BQ5BJD5 291 aa11.67□□□□□ -0.54
UPF3A-208ENST00000484246 MORN3Q6PF18 240 aaPredicted RBP11.67□□□□□ -0.54
UPF3A-208ENST00000484246 OVOL2Q9BRP0 275 aa11.67□□□□□ -0.54
UPF3A-208ENST00000484246 RSG1Q9BU20 258 aa11.67□□□□□ -0.54
UPF3A-208ENST00000484246 HLA-DRB4P13762 266 aa11.66□□□□□ -0.54
UPF3A-208ENST00000484246 ATF4P18848 351 aaPredicted RBP11.66□□□□□ -0.54
UPF3A-208ENST00000484246 MORN5Q5VZ52 161 aa11.66□□□□□ -0.54
UPF3A-208ENST00000484246 SPATA31B1PQ5VZV4 182 aa11.66□□□□□ -0.54
UPF3A-208ENST00000484246 FOXI2Q6ZQN5 318 aa11.66□□□□□ -0.54
UPF3A-208ENST00000484246 RNF183Q96D59 192 aa11.66□□□□□ -0.54
UPF3A-208ENST00000484246 HLA-DRB4X5D2U9 266 aa11.66□□□□□ -0.54
UPF3A-208ENST00000484246 KNCNA6PVL3 124 aa11.65□□□□□ -0.54
UPF3A-208ENST00000484246 H3BMM0 161 aa11.65□□□□□ -0.54
UPF3A-208ENST00000484246 ACTL10Q5JWF8 245 aa11.65□□□□□ -0.54
UPF3A-208ENST00000484246 BPIFA4PQ86YQ2 179 aa11.65□□□□□ -0.54
UPF3A-208ENST00000484246 C16orf92Q96LL3 132 aa11.65□□□□□ -0.54
UPF3A-208ENST00000484246 SAV1Q9H4B6 383 aaPredicted RBP11.65□□□□□ -0.54
UPF3A-208ENST00000484246 TRAV8-2A0A0B4J237 113 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 A8MTW9 85 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 C17orf112F2Z3M2 114 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 G3V3Q6 166 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 SPRY2O43597 315 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 IFNA5P01569 189 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 GIG44P09565 113 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-208ENST00000484246 IGLC2P0DOY2 106 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 DEFB135Q30KP9 77 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 Q5BKY6 102 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 LCN15Q6UWW0 184 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 ZNF709Q8N972 641 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 TENM3Q9P273 2699 aa11.64□□□□□ -0.55
UPF3A-208ENST00000484246 CA1P00915 261 aaPredicted RBP11.63□□□□□ -0.55
UPF3A-208ENST00000484246 GUK1Q16774 197 aa11.63□□□□□ -0.55
UPF3A-208ENST00000484246 OR2T35Q8NGX2 323 aa11.63□□□□□ -0.55
UPF3A-208ENST00000484246 C20orf173Q96LM9 149 aa11.63□□□□□ -0.55
UPF3A-208ENST00000484246 SLC50A1Q9BRV3 221 aa11.63□□□□□ -0.55
UPF3A-208ENST00000484246 HRH4Q9H3N8 390 aa11.63□□□□□ -0.55
UPF3A-208ENST00000484246 WFDC1Q9HC57 220 aa11.63□□□□□ -0.55
UPF3A-208ENST00000484246 RPRMQ9NS64 109 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms