RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 H3BRN7 92 aa12.76□□□□□ -0.37
COL9A3-212ENST00000481800 FGL1Q08830 312 aa12.76□□□□□ -0.37
COL9A3-212ENST00000481800 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.76□□□□□ -0.37
COL9A3-212ENST00000481800 CLUHP3Q96NS8 147 aa12.76□□□□□ -0.37
COL9A3-212ENST00000481800 SHANK2-AS3Q9BTD1 123 aa12.76□□□□□ -0.37
COL9A3-212ENST00000481800 GGACTQ9BVM4 153 aa12.76□□□□□ -0.37
COL9A3-212ENST00000481800 DNAH1Q9P2D7 4330 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 ELOA3CA0A087WX78 387 aaPredicted RBP12.75□□□□□ -0.37
COL9A3-212ENST00000481800 F6UB75 175 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 GOSR2O14653 212 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 RPL7P18124 248 aaKnown RBP12.75□□□□□ -0.37
COL9A3-212ENST00000481800 HLA-DMBP28068 263 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 CAV2P51636 162 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 PLP1P60201 277 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 PSG9Q00887 426 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 SLC38A11Q08AI6 406 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 FAM78BQ5VT40 261 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 C2orf50Q96LR7 162 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 ARL6Q9H0F7 186 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 RNF24Q9Y225 148 aa12.75□□□□□ -0.37
COL9A3-212ENST00000481800 IGHV3OR16-12A0A075B7B8 117 aa12.74□□□□□ -0.37
COL9A3-212ENST00000481800 A0A0J9YX75 114 aa12.74□□□□□ -0.37
COL9A3-212ENST00000481800 K7EPK0 472 aa12.74□□□□□ -0.37
COL9A3-212ENST00000481800 DEDDO75618 318 aa12.74□□□□□ -0.37
COL9A3-212ENST00000481800 PVALBP20472 110 aaPredicted RBP12.74□□□□□ -0.37
COL9A3-212ENST00000481800 ARL16Q0P5N6 197 aa12.74□□□□□ -0.37
COL9A3-212ENST00000481800 PXDC1Q5TGL8 231 aa12.74□□□□□ -0.37
COL9A3-212ENST00000481800 ZNF546Q86UE3 836 aa12.74□□□□□ -0.37
COL9A3-212ENST00000481800 C20orf173Q96LM9 149 aa12.74□□□□□ -0.37
COL9A3-212ENST00000481800 UHRF2Q96PU4 802 aa12.74□□□□□ -0.37
COL9A3-212ENST00000481800 LYSTQ99698 3801 aa12.73□□□□□ -0.37
COL9A3-212ENST00000481800 IGLL5B9A064 214 aa12.73□□□□□ -0.37
COL9A3-212ENST00000481800 TCTAP57738 103 aa12.73□□□□□ -0.37
COL9A3-212ENST00000481800 S100A10P60903 97 aa12.73□□□□□ -0.37
COL9A3-212ENST00000481800 ASAH1Q13510 395 aa12.73□□□□□ -0.37
COL9A3-212ENST00000481800 LRRC20Q8TCA0 184 aa12.73□□□□□ -0.37
COL9A3-212ENST00000481800 NEU1Q99519 415 aa12.73□□□□□ -0.37
COL9A3-212ENST00000481800 SLC35B3Q9H1N7 401 aa12.73□□□□□ -0.37
COL9A3-212ENST00000481800 ARV1Q9H2C2 271 aa12.73□□□□□ -0.37
COL9A3-212ENST00000481800 TRAV10A0A0B4J240 114 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 SMIM9A6NGZ8 99 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 AGPAT2O15120 278 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 DUSP14O95147 198 aaKnown RBP12.72□□□□□ -0.37
COL9A3-212ENST00000481800 RAB31Q13636 194 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 PLECQ15149 4684 aaKnown RBP12.72□□□□□ -0.37
COL9A3-212ENST00000481800 LGALS9CQ6DKI2 356 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 ZNF705AQ6ZN79 300 aaPredicted RBP12.72□□□□□ -0.37
COL9A3-212ENST00000481800 Q6ZTC4 211 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 ZNF709Q8N972 641 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 ENKURQ8TC29 256 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 C17orf77Q96MU5 243 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 GOLT1BQ9Y3E0 138 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 AGRNO00468 2067 aa12.72□□□□□ -0.37
COL9A3-212ENST00000481800 TMEM189A5PLL7 270 aa12.71□□□□□ -0.37
COL9A3-212ENST00000481800 ZNF705FA8MVS1 300 aaPredicted RBP12.71□□□□□ -0.37
COL9A3-212ENST00000481800 CST7O76096 145 aa12.71□□□□□ -0.37
COL9A3-212ENST00000481800 ZNF705DP0CH99 300 aaPredicted RBP12.71□□□□□ -0.37
COL9A3-212ENST00000481800 ZNF705BP0CI00 300 aaPredicted RBP12.71□□□□□ -0.37
COL9A3-212ENST00000481800 IGFL4Q6B9Z1 124 aa12.71□□□□□ -0.37
COL9A3-212ENST00000481800 PATE2Q6UY27 113 aa12.71□□□□□ -0.37
COL9A3-212ENST00000481800 RNF182Q8N6D2 247 aa12.71□□□□□ -0.37
COL9A3-212ENST00000481800 ZNF738Q8NE65 137 aa12.71□□□□□ -0.37
COL9A3-212ENST00000481800 GPN1Q9HCN4 374 aaPredicted RBP12.71□□□□□ -0.37
COL9A3-212ENST00000481800 TRAV8-2A0A0B4J237 113 aa12.7□□□□□ -0.38
COL9A3-212ENST00000481800 FAM24AA6NFZ4 105 aa12.7□□□□□ -0.38
COL9A3-212ENST00000481800 A6NHS1 94 aa12.7□□□□□ -0.38
COL9A3-212ENST00000481800 COX7A2P2O60397 106 aa12.7□□□□□ -0.38
COL9A3-212ENST00000481800 UPK1BO75841 260 aa12.7□□□□□ -0.38
COL9A3-212ENST00000481800 EMP1P54849 157 aa12.7□□□□□ -0.38
COL9A3-212ENST00000481800 UQCC1Q9NVA1 299 aa12.7□□□□□ -0.38
COL9A3-212ENST00000481800 CELA1Q9UNI1 258 aa12.7□□□□□ -0.38
COL9A3-212ENST00000481800 RFNGQ9Y644 331 aa12.7□□□□□ -0.38
COL9A3-212ENST00000481800 ALMS1Q8TCU4 4167 aa12.69□□□□□ -0.38
COL9A3-212ENST00000481800 CAMLGP49069 296 aa12.69□□□□□ -0.38
COL9A3-212ENST00000481800 CNN1P51911 297 aaKnown RBP12.69□□□□□ -0.38
COL9A3-212ENST00000481800 RAB32Q13637 225 aa12.69□□□□□ -0.38
COL9A3-212ENST00000481800 C12orf74Q32Q52 190 aa12.69□□□□□ -0.38
COL9A3-212ENST00000481800 LINC00305Q7Z4B0 112 aa12.69□□□□□ -0.38
COL9A3-212ENST00000481800 STX12Q86Y82 276 aa12.69□□□□□ -0.38
COL9A3-212ENST00000481800 MGST2Q99735 147 aa12.69□□□□□ -0.38
COL9A3-212ENST00000481800 TMEM208Q9BTX3 173 aa12.69□□□□□ -0.38
COL9A3-212ENST00000481800 PTTG2Q9NZH5 202 aa12.69□□□□□ -0.38
COL9A3-212ENST00000481800 A0A087X0K7 114 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 HBE1P02100 147 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 AMBPP02760 352 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 SPART-AS1P0CW21 52 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 S100A11P31949 105 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 SULT1A1P50225 295 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 Q6ZRG5 221 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 ZNF767PQ75MW2 155 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 NRARPQ7Z6K4 114 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 LYRM2Q9NU23 88 aaPredicted RBP12.68□□□□□ -0.38
COL9A3-212ENST00000481800 HYDINQ4G0P3 5121 aa12.68□□□□□ -0.38
COL9A3-212ENST00000481800 DEFB131BA0A096LNP1 70 aa12.67□□□□□ -0.38
COL9A3-212ENST00000481800 A8MTW9 85 aa12.67□□□□□ -0.38
COL9A3-212ENST00000481800 HBG1P69891 147 aa12.67□□□□□ -0.38
COL9A3-212ENST00000481800 HBG2P69892 147 aa12.67□□□□□ -0.38
COL9A3-212ENST00000481800 C10orf113Q5VZT2 155 aa12.67□□□□□ -0.38
COL9A3-212ENST00000481800 BPIFA4PQ86YQ2 179 aa12.67□□□□□ -0.38
COL9A3-212ENST00000481800 IGF2BP2-AS1Q96M15 143 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms