RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 RAB31Q13636 194 aa9.58□□□□□ -0.88
COL28A1-206ENST00000465339 ATP6V1FQ16864 119 aa9.58□□□□□ -0.88
COL28A1-206ENST00000465339 MORN3Q6PF18 240 aaPredicted RBP9.58□□□□□ -0.88
COL28A1-206ENST00000465339 ZNF546Q86UE3 836 aa9.58□□□□□ -0.88
COL28A1-206ENST00000465339 STX12Q86Y82 276 aa9.58□□□□□ -0.88
COL28A1-206ENST00000465339 TMEM252Q8N6L7 170 aa9.58□□□□□ -0.88
COL28A1-206ENST00000465339 GATAD1Q8WUU5 269 aa9.58□□□□□ -0.88
COL28A1-206ENST00000465339 SLC25A22Q9H936 323 aa9.58□□□□□ -0.88
COL28A1-206ENST00000465339 HIGD1AQ9Y241 93 aa9.58□□□□□ -0.88
COL28A1-206ENST00000465339 OR5G3P0C626 314 aa9.57□□□□□ -0.88
COL28A1-206ENST00000465339 SPP1P10451 314 aa9.57□□□□□ -0.88
COL28A1-206ENST00000465339 PSMB3P49720 205 aa9.57□□□□□ -0.88
COL28A1-206ENST00000465339 TMEM41BQ5BJD5 291 aa9.57□□□□□ -0.88
COL28A1-206ENST00000465339 ACTL10Q5JWF8 245 aa9.57□□□□□ -0.88
COL28A1-206ENST00000465339 TRPT1Q86TN4 253 aaKnown RBP9.57□□□□□ -0.88
COL28A1-206ENST00000465339 TMEM217Q8N7C4 229 aa9.57□□□□□ -0.88
COL28A1-206ENST00000465339 SHANK2-AS3Q9BTD1 123 aa9.57□□□□□ -0.88
COL28A1-206ENST00000465339 SLC25A39Q9BZJ4 359 aaPredicted RBP9.57□□□□□ -0.88
COL28A1-206ENST00000465339 UQCC1Q9NVA1 299 aa9.57□□□□□ -0.88
COL28A1-206ENST00000465339 IGSF23A1L1A6 192 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 KNCNA6PVL3 124 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 E5RGE8 158 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 H3BRN7 92 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 ISLRO14498 428 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 PTTG1O95997 202 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 CA1P00915 261 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-206ENST00000465339 VWC2Q2TAL6 325 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 CASC10Q5T4H9 136 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 RSG1Q9BU20 258 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 SSBP4Q9BWG4 385 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-206ENST00000465339 SLC25A31Q9H0C2 315 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 ARL6Q9H0F7 186 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 SLC25A32Q9H2D1 315 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 DOK5Q9P104 306 aa9.56□□□□□ -0.88
COL28A1-206ENST00000465339 SOCS3O14543 225 aa9.55□□□□□ -0.88
COL28A1-206ENST00000465339 RPL7P18124 248 aaKnown RBP9.55□□□□□ -0.88
COL28A1-206ENST00000465339 CAMLGP49069 296 aa9.55□□□□□ -0.88
COL28A1-206ENST00000465339 H2BFSP57053 126 aa9.55□□□□□ -0.88
COL28A1-206ENST00000465339 Q6ZRG5 221 aa9.55□□□□□ -0.88
COL28A1-206ENST00000465339 LINC00052Q96N35 136 aa9.55□□□□□ -0.88
COL28A1-206ENST00000465339 MGST2Q99735 147 aa9.55□□□□□ -0.88
COL28A1-206ENST00000465339 SCRT1Q9BWW7 348 aa9.55□□□□□ -0.88
COL28A1-206ENST00000465339 ARV1Q9H2C2 271 aa9.55□□□□□ -0.88
COL28A1-206ENST00000465339 WDR83OSQ9Y284 106 aa9.55□□□□□ -0.88
COL28A1-206ENST00000465339 H3BMM0 161 aa9.54□□□□□ -0.88
COL28A1-206ENST00000465339 NUTF2P61970 127 aaKnown RBP9.54□□□□□ -0.88
COL28A1-206ENST00000465339 LRRC37A5PQ49AS3 106 aa9.54□□□□□ -0.88
COL28A1-206ENST00000465339 SPATA31B1PQ5VZV4 182 aa9.54□□□□□ -0.88
COL28A1-206ENST00000465339 PATE2Q6UY27 113 aa9.54□□□□□ -0.88
COL28A1-206ENST00000465339 PPP1R1CQ8WVI7 109 aa9.54□□□□□ -0.88
COL28A1-206ENST00000465339 C16orf92Q96LL3 132 aa9.54□□□□□ -0.88
COL28A1-206ENST00000465339 RARRES2Q99969 163 aa9.54□□□□□ -0.88
COL28A1-206ENST00000465339 COX7A2P2O60397 106 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 MPDU1O75352 247 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 PET100P0DJ07 73 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 HLA-DRB4P13762 266 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 RPL29P47914 159 aaKnown RBP9.53□□□□□ -0.88
COL28A1-206ENST00000465339 NHLH2Q02577 135 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 BAXQ07812 192 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 FOXI2Q6ZQN5 318 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 OR11H2Q8NH07 326 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 UHRF2Q96PU4 802 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 C1QTNF4Q9BXJ3 329 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 SAV1Q9H4B6 383 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-206ENST00000465339 DNAJC4Q9NNZ3 241 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 RPRMQ9NS64 109 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 OR5AC2Q9NZP5 309 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 HLA-DRB4X5D2U9 266 aa9.53□□□□□ -0.88
COL28A1-206ENST00000465339 A0A0J9YWU9 116 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 H0YIZ8 118 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 MPC2O95563 127 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 GIG44P09565 113 aaPredicted RBP9.52□□□□□ -0.89
COL28A1-206ENST00000465339 EWSR1Q01844 656 aaKnown RBP eCLIP9.52□□□□□ -0.89
COL28A1-206ENST00000465339 C10orf113Q5VZT2 155 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 ZFAND6Q6FIF0 208 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 EBLN2Q6P2I7 272 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 LINC00305Q7Z4B0 112 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 OR5C1Q8NGR4 320 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 OR1L4Q8NGR5 311 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 TMEM37Q8WXS4 190 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 C17orf77Q96MU5 243 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 PFDN5Q99471 154 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 RNF126Q9BV68 326 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 ALG5Q9Y673 324 aa9.52□□□□□ -0.89
COL28A1-206ENST00000465339 A0A087X0K7 114 aa9.51□□□□□ -0.89
COL28A1-206ENST00000465339 UBE2L5PA0A1B0GUS4 154 aa9.51□□□□□ -0.89
COL28A1-206ENST00000465339 FGF7P21781 194 aa9.51□□□□□ -0.89
COL28A1-206ENST00000465339 OPCMLQ14982 345 aa9.51□□□□□ -0.89
COL28A1-206ENST00000465339 MIC13Q5XKP0 118 aa9.51□□□□□ -0.89
COL28A1-206ENST00000465339 BPIFA4PQ86YQ2 179 aa9.51□□□□□ -0.89
COL28A1-206ENST00000465339 RNF141Q8WVD5 230 aa9.51□□□□□ -0.89
COL28A1-206ENST00000465339 SLC39A9Q9NUM3 307 aa9.51□□□□□ -0.89
COL28A1-206ENST00000465339 TENM2Q9NT68 2774 aa9.51□□□□□ -0.89
COL28A1-206ENST00000465339 DNAH7Q8WXX0 4024 aa9.5□□□□□ -0.89
COL28A1-206ENST00000465339 H2AFB1P0C5Y9 115 aa9.5□□□□□ -0.89
COL28A1-206ENST00000465339 C4BPBP20851 252 aa9.5□□□□□ -0.89
COL28A1-206ENST00000465339 FGL1Q08830 312 aa9.5□□□□□ -0.89
COL28A1-206ENST00000465339 GDF5OSQ5U4N7 250 aa9.5□□□□□ -0.89
COL28A1-206ENST00000465339 CSNK1G2-AS1Q8NCQ2 148 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms