RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 RSG1Q9BU20 258 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 GGACTQ9BVM4 153 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 SCRT1Q9BWW7 348 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 SLC25A39Q9BZJ4 359 aaPredicted RBP8.68□□□□□ -1.02
USP40-210ENST00000454354 RPRMQ9NS64 109 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 GSKIPQ9P0R6 139 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 MGAT4CQ9UBM8 478 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 HIGD1AQ9Y241 93 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 TRAV6A0A075B6T7 132 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 F6UB75 175 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 CCSO14618 274 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 HYPMO75409 117 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 HLA-DMBP28068 263 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 RAP2BP61225 183 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 ARL16Q0P5N6 197 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 FAM78BQ5VT40 261 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 EBLN2Q6P2I7 272 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 TEPPQ6URK8 271 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 GSG1LQ6UXU4 331 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 S100ZQ8WXG8 99 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 SEC22CQ9BRL7 303 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 DOK5Q9P104 306 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 CELA1Q9UNI1 258 aa8.67□□□□□ -1.02
USP40-210ENST00000454354 A0A087X0K7 114 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 TRAV10A0A0B4J240 114 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 SMIM9A6NGZ8 99 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 DEDDO75618 318 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 IGKV3-20P01619 116 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 RPL7P18124 248 aaKnown RBP8.66□□□□□ -1.02
USP40-210ENST00000454354 PSG9Q00887 426 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 ASAH1Q13510 395 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 ZNF846Q147U1 533 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 PXDC1Q5TGL8 231 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 PATE2Q6UY27 113 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 Q6ZTC4 211 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 S100A7AQ86SG5 101 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 ZNF546Q86UE3 836 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 C12orf45Q8N5I9 185 aaPredicted RBP8.66□□□□□ -1.02
USP40-210ENST00000454354 OR4B1Q8NGF8 309 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 SLC35B3Q9H1N7 401 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 C11orf1Q9H5F2 150 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 APLNQ9ULZ1 77 aa8.66□□□□□ -1.02
USP40-210ENST00000454354 TRAV8-2A0A0B4J237 113 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 FAM240BA0A1B0GVZ2 78 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 L7N2F9 121 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 H2AFB2P0C5Z0 115 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 FXYD7P58549 80 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 VAMP2P63027 116 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 SLC38A11Q08AI6 406 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 AMTNQ6UX39 209 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 UHRF2Q96PU4 802 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 RNF24Q9Y225 148 aa8.65□□□□□ -1.02
USP40-210ENST00000454354 TMEM189A5PLL7 270 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 C5orf51A6NDU8 294 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 FAM25EA8MYX2 175 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 AGPAT2O15120 278 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 MRPS12O15235 138 aaKnown RBP8.64□□□□□ -1.03
USP40-210ENST00000454354 OR5G3P0C626 314 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 IL15RAQ13261 267 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 C12orf74Q32Q52 190 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 MZT2BQ6NZ67 158 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 C2orf50Q96LR7 162 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 ARL6Q9H0F7 186 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 ARV1Q9H2C2 271 aa8.64□□□□□ -1.03
USP40-210ENST00000454354 LSM5Q9Y4Y9 91 aaKnown RBP8.64□□□□□ -1.03
USP40-210ENST00000454354 HECTD4Q9Y4D8 3996 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 A6NHS1 94 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 IGLL5B9A064 214 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 GOSR2O14653 212 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 DUSP14O95147 198 aaKnown RBP8.63□□□□□ -1.03
USP40-210ENST00000454354 CXCL2P19875 107 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 C1orf158Q8N1D5 194 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 RPP25LQ8N5L8 163 aaKnown RBP8.63□□□□□ -1.03
USP40-210ENST00000454354 RNF182Q8N6D2 247 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 MGST2Q99735 147 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 RNF126Q9BV68 326 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 LYRM2Q9NU23 88 aaPredicted RBP8.63□□□□□ -1.03
USP40-210ENST00000454354 GOLT1BQ9Y3E0 138 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 RFNGQ9Y644 331 aa8.63□□□□□ -1.03
USP40-210ENST00000454354 IGHV4-4A0A075B6R2 117 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 TEX48A0A1B0GUV7 120 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 AMBPP02760 352 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 CXCL3P19876 107 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 PVALBP20472 110 aaPredicted RBP8.62□□□□□ -1.03
USP40-210ENST00000454354 BCAP31P51572 246 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 CAV2P51636 162 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 CNN1P51911 297 aaKnown RBP8.62□□□□□ -1.03
USP40-210ENST00000454354 VWC2Q2TAL6 325 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 IGFL4Q6B9Z1 124 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 LINC00305Q7Z4B0 112 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 OR11H7Q8NGC8 314 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 IGF2BP2-AS1Q96M15 143 aa8.62□□□□□ -1.03
USP40-210ENST00000454354 IGHV3OR16-12A0A075B7B8 117 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 DEFB131BA0A096LNP1 70 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 FAM24AA6NFZ4 105 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 CRXO43186 299 aaPredicted RBP8.61□□□□□ -1.03
USP40-210ENST00000454354 UPK1BO75841 260 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 CST7O76096 145 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 SPART-AS1P0CW21 52 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 CAMLGP49069 296 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms