RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 BPESC1Q9GZL8 116 aa11.29□□□□□ -0.6
LIMD1-202ENST00000440097 PRTN3P24158 256 aa11.29□□□□□ -0.6
LIMD1-202ENST00000440097 ZFP36P26651 326 aaKnown RBP11.29□□□□□ -0.6
LIMD1-202ENST00000440097 EBLN2Q6P2I7 272 aa11.29□□□□□ -0.6
LIMD1-202ENST00000440097 VMO1Q7Z5L0 202 aa11.29□□□□□ -0.6
LIMD1-202ENST00000440097 CACNG8Q8WXS5 425 aa11.29□□□□□ -0.6
LIMD1-202ENST00000440097 FAM181BA6NEQ2 426 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 M0QZ24 198 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 ISLRO14498 428 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 IGLV2-8P01709 118 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 PRR20EP86478 221 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 PRR20CP86479 221 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 PRR20DP86480 221 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 PRR20BP86481 221 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 PRR20AP86496 221 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 FNDC4Q9H6D8 234 aaPredicted RBP11.28□□□□□ -0.6
LIMD1-202ENST00000440097 TP73-AS1Q9UF72 201 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 TENM4Q6N022 2769 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 A1L4Q6 167 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 OR7C2O60412 319 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 VAMP3Q15836 100 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 OR11H6Q8NGC7 330 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 ZNF331Q9NQX6 463 aaPredicted RBP11.28□□□□□ -0.6
LIMD1-202ENST00000440097 TECRQ9NZ01 308 aaKnown RBP11.28□□□□□ -0.6
LIMD1-202ENST00000440097 MRPL27Q9P0M9 148 aaKnown RBP11.28□□□□□ -0.6
LIMD1-202ENST00000440097 IZUMO1RA6ND01 250 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 M0R2Z0 102 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 HSBP1O75506 76 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 NHLRC2Q8NBF2 726 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 FAM168AQ92567 244 aa11.28□□□□□ -0.6
LIMD1-202ENST00000440097 HECTD1Q9ULT8 2610 aa11.27□□□□□ -0.6
LIMD1-202ENST00000440097 LY6LH3BQJ8 138 aa11.27□□□□□ -0.61
LIMD1-202ENST00000440097 LINC00869P0C866 280 aa11.27□□□□□ -0.61
LIMD1-202ENST00000440097 MRGPRG-AS1Q2M3A8 158 aa11.27□□□□□ -0.61
LIMD1-202ENST00000440097 RNF24Q9Y225 148 aa11.27□□□□□ -0.61
LIMD1-202ENST00000440097 GGTLC3B5MD39 225 aa11.27□□□□□ -0.61
LIMD1-202ENST00000440097 SSBP2P81877 361 aaPredicted RBP11.27□□□□□ -0.61
LIMD1-202ENST00000440097 SPATA12Q7Z6I5 190 aa11.27□□□□□ -0.61
LIMD1-202ENST00000440097 SRSF12Q8WXF0 261 aaKnown RBP11.27□□□□□ -0.61
LIMD1-202ENST00000440097 ZNF503Q96F45 646 aa11.27□□□□□ -0.61
LIMD1-202ENST00000440097 TMEM167BQ9NRX6 74 aa11.27□□□□□ -0.61
LIMD1-202ENST00000440097 INS-IGF2F8WCM5 200 aa11.26□□□□□ -0.61
LIMD1-202ENST00000440097 UBE2G1P62253 170 aa11.26□□□□□ -0.61
LIMD1-202ENST00000440097 TRAV30A0A087WSZ9 112 aa11.26□□□□□ -0.61
LIMD1-202ENST00000440097 NCBP2LA6PVI3 153 aaKnown RBP11.26□□□□□ -0.61
LIMD1-202ENST00000440097 RNASEKQ6P5S7 137 aaKnown RBP11.26□□□□□ -0.61
LIMD1-202ENST00000440097 KIR3DL3Q8N743 410 aa11.26□□□□□ -0.61
LIMD1-202ENST00000440097 IGF2BP2-AS1Q96M15 143 aa11.26□□□□□ -0.61
LIMD1-202ENST00000440097 GSX1Q9H4S2 264 aaPredicted RBP11.26□□□□□ -0.61
LIMD1-202ENST00000440097 ARL2-SNX15V9GYD0 113 aa11.26□□□□□ -0.61
LIMD1-202ENST00000440097 GDF5OSQ5U4N7 250 aa11.25□□□□□ -0.61
LIMD1-202ENST00000440097 SLC25A33Q9BSK2 321 aa11.25□□□□□ -0.61
LIMD1-202ENST00000440097 COX7A2P2O60397 106 aa11.25□□□□□ -0.61
LIMD1-202ENST00000440097 TOX4O94842 621 aa11.25□□□□□ -0.61
LIMD1-202ENST00000440097 MOSP00540 346 aa11.25□□□□□ -0.61
LIMD1-202ENST00000440097 CRYGBP07316 175 aa11.25□□□□□ -0.61
LIMD1-202ENST00000440097 MRPL36Q9P0J6 103 aaKnown RBP11.25□□□□□ -0.61
LIMD1-202ENST00000440097 TLN2Q9Y4G6 2542 aa11.25□□□□□ -0.61
LIMD1-202ENST00000440097 CBY3A6NI87 242 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 C2orf70A6NJV1 201 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 NBR2O15453 112 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 MFAP2P55001 183 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 CCL19Q99731 98 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 TNFRSF19Q9NS68 423 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 TAS2R45P59539 299 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 MPV17L2Q567V2 206 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 RUSC1-AS1Q66K80 236 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 CCDC144NLQ6NUI1 221 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 CLEC5AQ9NY25 188 aa11.24□□□□□ -0.61
LIMD1-202ENST00000440097 ODF3BA8MYP8 253 aa11.23□□□□□ -0.61
LIMD1-202ENST00000440097 PPBPP02775 128 aa11.23□□□□□ -0.61
LIMD1-202ENST00000440097 LINC00479Q96M42 142 aa11.23□□□□□ -0.61
LIMD1-202ENST00000440097 RNF5Q99942 180 aa11.23□□□□□ -0.61
LIMD1-202ENST00000440097 SSBP4Q9BWG4 385 aaPredicted RBP11.23□□□□□ -0.61
LIMD1-202ENST00000440097 HOXB4P17483 251 aaPredicted RBP11.23□□□□□ -0.61
LIMD1-202ENST00000440097 ORM2P19652 201 aa11.23□□□□□ -0.61
LIMD1-202ENST00000440097 PRR31Q5SQ13 230 aa11.23□□□□□ -0.61
LIMD1-202ENST00000440097 VPS25Q9BRG1 176 aa11.23□□□□□ -0.61
LIMD1-202ENST00000440097 ZNF355PQ9NSJ1 428 aa11.23□□□□□ -0.61
LIMD1-202ENST00000440097 ZANQ9Y493 2812 aa11.23□□□□□ -0.61
LIMD1-202ENST00000440097 TCRBV4S1A1TA0A5B7 111 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 IGHV4-39P01824 125 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 C1orf122Q6ZSJ8 110 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 WIPF2Q8TF74 440 aaPredicted RBP11.22□□□□□ -0.61
LIMD1-202ENST00000440097 CFHR4Q92496 578 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 TEX22C9J3V5 150 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 TAX1BP3O14907 124 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 PSG1P11464 419 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 KLF5Q13887 457 aaPredicted RBP11.22□□□□□ -0.61
LIMD1-202ENST00000440097 C16orf54Q6UWD8 224 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 DYNAPQ8N1N2 210 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 NUP35Q8NFH5 326 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 F11RQ9Y624 299 aaKnown RBP11.22□□□□□ -0.61
LIMD1-202ENST00000440097 GCN1Q92616 2671 aaKnown RBP11.22□□□□□ -0.61
LIMD1-202ENST00000440097 TRAV5A0A0B4J249 113 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 CORTO00230 105 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 RHOGP84095 191 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 C10orf113Q5VZT2 155 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 OR1B1Q8NGR6 318 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 C19orf24Q9BVV8 132 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms