RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SCNM1Q9BWG6 230 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 PRRC2CQ9Y520 2896 aaKnown RBP8.99□□□□□ -0.97
USP4-205ENST00000431357 IGHV3-21A0A0B4J1V1 117 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 HAX1O00165 279 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 COL8A1P27658 744 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 FOXA3P55318 350 aaPredicted RBP8.98□□□□□ -0.97
USP4-205ENST00000431357 LCN12Q6JVE5 192 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 LYPD1Q8N2G4 141 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 CHEK1O14757 476 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 CRXO43186 299 aaPredicted RBP8.98□□□□□ -0.97
USP4-205ENST00000431357 OR5AL1P0C617 328 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 TSPOP30536 169 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 VAMP3Q15836 100 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 Q56UQ5 140 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 S100A7AQ86SG5 101 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 Q8NA96 180 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 URB1-AS1Q96HZ7 61 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 FBXL15Q9H469 300 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 CLEC5AQ9NY25 188 aa8.98□□□□□ -0.97
USP4-205ENST00000431357 CACNA1HO95180 2353 aa8.97□□□□□ -0.97
USP4-205ENST00000431357 PPIAL4CA0A0B4J2A2 164 aa8.97□□□□□ -0.97
USP4-205ENST00000431357 APELAP0DMC3 54 aa8.97□□□□□ -0.97
USP4-205ENST00000431357 PPIAL4GP0DN37 164 aa8.97□□□□□ -0.97
USP4-205ENST00000431357 PLGLAQ15195 96 aa8.97□□□□□ -0.97
USP4-205ENST00000431357 SAMD13Q5VXD3 122 aa8.97□□□□□ -0.97
USP4-205ENST00000431357 BPIFA4PQ86YQ2 179 aa8.97□□□□□ -0.97
USP4-205ENST00000431357 TMEM75Q8N9X5 138 aa8.97□□□□□ -0.97
USP4-205ENST00000431357 LOC102724200A0A096LPH7 203 aaPredicted RBP8.96□□□□□ -0.97
USP4-205ENST00000431357 A0A1B0GW15 77 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 LY6LH3BQJ8 138 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 H3BTX0 84 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 K7EQM0 130 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 ATOH7Q8N100 152 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 MTURNQ8N3F0 131 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 OR4F17Q8NGA8 305 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 SHANK2-AS3Q9BTD1 123 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 MEGF9Q9H1U4 602 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 NAV3Q8IVL0 2385 aa8.96□□□□□ -0.97
USP4-205ENST00000431357 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.96□□□□□ -0.98
USP4-205ENST00000431357 IGLV2-11P01706 119 aa8.96□□□□□ -0.98
USP4-205ENST00000431357 GOLT1AQ6ZVE7 132 aa8.96□□□□□ -0.98
USP4-205ENST00000431357 PRNTQ86SH4 94 aa8.96□□□□□ -0.98
USP4-205ENST00000431357 GATD1Q8NB37 220 aa8.96□□□□□ -0.98
USP4-205ENST00000431357 DSPP15924 2871 aaKnown RBP8.95□□□□□ -0.98
USP4-205ENST00000431357 CUL9Q8IWT3 2517 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 TRBV19A0A075B6N1 114 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 H3BRN7 92 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 LEPROTL1O95214 131 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 IGKV1-17P01599 117 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 LIPFP07098 398 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 IGLL1P15814 213 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 COX7A1P24310 79 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 RIGQ13278 110 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 Q5PR19 223 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 FAM120AOSQ5T036 256 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 CIARTQ8N365 385 aaPredicted RBP8.95□□□□□ -0.98
USP4-205ENST00000431357 VKORC1Q9BQB6 163 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 ST20Q9HBF5 79 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 IGHV1-24A0A0C4DH33 117 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.95□□□□□ -0.98
USP4-205ENST00000431357 G3V4G9 280 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 SYS1-DBNDD2H3BUS1 97 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 CNIH1O95406 144 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 APOHP02749 345 aaPredicted RBP8.95□□□□□ -0.98
USP4-205ENST00000431357 Q6AWC8 147 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 UNQ5815/PRO19632Q6UWF5 114 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 EXOC3-AS1Q8N2X6 119 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 RAB1BQ9H0U4 201 aa8.95□□□□□ -0.98
USP4-205ENST00000431357 A0A1B0GUT8 65 aa8.94□□□□□ -0.98
USP4-205ENST00000431357 OR4C46A6NHA9 309 aa8.94□□□□□ -0.98
USP4-205ENST00000431357 K7EIM0 57 aa8.94□□□□□ -0.98
USP4-205ENST00000431357 LY6G5BQ8NDX9 201 aa8.94□□□□□ -0.98
USP4-205ENST00000431357 ATP6V0BQ99437 205 aa8.94□□□□□ -0.98
USP4-205ENST00000431357 TMEM191AQ9H0A3 160 aa8.94□□□□□ -0.98
USP4-205ENST00000431357 TRAV8-1A0A0A6YYK1 113 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 MUC15Q8N387 334 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 KIR3DL3Q8N743 410 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 MAP1LC3CQ9BXW4 147 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 HSPB8Q9UJY1 196 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 PSG8Q9UQ74 426 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 LOC400499M0QZD8 3231 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 NBR2O15453 112 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 HLA-DRB1P01911 266 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 HTR1DP28221 377 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 CEACAM3P40198 252 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 DLX1P56177 255 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 SIGLEC15Q6ZMC9 328 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 ZNF491Q8N8L2 437 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 NPBQ8NG41 125 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 RNF125Q96EQ8 232 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 DPM3Q9P2X0 92 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 EP300Q09472 2414 aaPredicted RBP8.93□□□□□ -0.98
USP4-205ENST00000431357 NBEAQ8NFP9 2946 aa8.93□□□□□ -0.98
USP4-205ENST00000431357 SPENQ96T58 3664 aaKnown RBP8.92□□□□□ -0.98
USP4-205ENST00000431357 ARFGEF3Q5TH69 2177 aa8.92□□□□□ -0.98
USP4-205ENST00000431357 WI2-2373I1.2A0A1W2PRP0 233 aa8.92□□□□□ -0.98
USP4-205ENST00000431357 GAGE12BA1L429 117 aa8.92□□□□□ -0.98
USP4-205ENST00000431357 SH2D7A6NKC9 451 aaPredicted RBP8.92□□□□□ -0.98
USP4-205ENST00000431357 LYNX1G3V0Z9 82 aa8.92□□□□□ -0.98
USP4-205ENST00000431357 TIMM23O14925 209 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms