RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 OR4F4Q96R69 305 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 CITED4Q96RK1 184 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 TREM1Q9NP99 234 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 ATRQ13535 2644 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 RBFOX3A6NFN3 312 aa13.14□□□□□ -0.31
CCDC28B-202ENST00000421922 OR10J4P0C629 311 aa13.14□□□□□ -0.31
CCDC28B-202ENST00000421922 BCL2P10415 239 aa13.14□□□□□ -0.31
CCDC28B-202ENST00000421922 RPL7P18124 248 aaKnown RBP13.14□□□□□ -0.31
CCDC28B-202ENST00000421922 HOXD3P31249 432 aaPredicted RBP13.14□□□□□ -0.31
CCDC28B-202ENST00000421922 C8orf86Q6ZUL3 223 aa13.14□□□□□ -0.31
CCDC28B-202ENST00000421922 FAM167A-AS1Q96KT0 104 aa13.14□□□□□ -0.31
CCDC28B-202ENST00000421922 TMEM231Q9H6L2 316 aa13.14□□□□□ -0.31
CCDC28B-202ENST00000421922 A0A1W2PS18 150 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 PYYP10082 97 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 UBE2G2P60604 165 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 UQCC3Q6UW78 93 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 UNQ9165/PRO28630Q6UXU0 137 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 C1QL4Q86Z23 238 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 DAZ1Q9NQZ3 744 aaKnown RBP13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 ATF4P18848 351 aaPredicted RBP13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 CRYBB3P26998 211 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 CST9LP1Q5W188 147 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 REC114Q7Z4M0 266 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 GPR82Q96P67 336 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 TMEM14CQ9P0S9 112 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 VAX2Q9UIW0 290 aa13.13□□□□□ -0.31
CCDC28B-202ENST00000421922 IGHV3-49A0A0A0MS15 119 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 LOC102723971A0A1B0GUV8 181 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 K7EMT4 169 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 GP9P14770 177 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 GALR1P47211 349 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 SYNJ2BPP57105 145 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 PMS2P11Q13670 270 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 NSUN5P1Q3KNT7 163 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 ZNF506Q5JVG8 444 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 C1orf194Q5T5A4 169 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 BLNKQ8WV28 456 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 ZNF414Q96IQ9 312 aa13.12□□□□□ -0.31
CCDC28B-202ENST00000421922 CUBNO60494 3623 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 IGHV3OR16-13A0A075B7E8 117 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 IGHV3-74A0A0B4J1X5 117 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 IGHV3-66A0A0C4DH42 116 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 M0QZ24 198 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 LGALS9O00182 355 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 PAGE4O60829 102 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 HIST1H1EP10412 219 aaKnown RBP13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 SLURP1P55000 103 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 HIST2H2BDQ6DRA6 164 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 EIF4E3Q8N5X7 224 aaKnown RBP13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 RXFP4Q8TDU9 374 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 ZNF503Q96F45 646 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 ELOVL1Q9BW60 279 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 PEMTQ9UBM1 199 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 ARL2-SNX15V9GYD0 113 aa13.11□□□□□ -0.31
CCDC28B-202ENST00000421922 IGHV7-4-1A0A0J9YVY3 117 aa13.1□□□□□ -0.31
CCDC28B-202ENST00000421922 NBEAP1P0C6P0 100 aa13.1□□□□□ -0.31
CCDC28B-202ENST00000421922 TM4SF20Q53R12 229 aa13.1□□□□□ -0.31
CCDC28B-202ENST00000421922 NDUFA11Q86Y39 141 aa13.1□□□□□ -0.31
CCDC28B-202ENST00000421922 FXYD5Q96DB9 178 aa13.1□□□□□ -0.31
CCDC28B-202ENST00000421922 DUX3Q96PT4 197 aa13.1□□□□□ -0.31
CCDC28B-202ENST00000421922 RARRES2Q99969 163 aa13.1□□□□□ -0.31
CCDC28B-202ENST00000421922 TXNDC17Q9BRA2 123 aa13.1□□□□□ -0.31
CCDC28B-202ENST00000421922 SMDT1Q9H4I9 107 aa13.1□□□□□ -0.31
CCDC28B-202ENST00000421922 ZNF785A8K8V0 405 aa13.09□□□□□ -0.31
CCDC28B-202ENST00000421922 A8MWP6 167 aa13.09□□□□□ -0.31
CCDC28B-202ENST00000421922 C11orf94C9JXX5 98 aa13.09□□□□□ -0.31
CCDC28B-202ENST00000421922 CCL24O00175 119 aa13.09□□□□□ -0.31
CCDC28B-202ENST00000421922 BUB3O43684 328 aa13.09□□□□□ -0.31
CCDC28B-202ENST00000421922 ATP6V1G1O75348 118 aa13.09□□□□□ -0.31
CCDC28B-202ENST00000421922 MEF2BQ02080 365 aaPredicted RBP13.09□□□□□ -0.31
CCDC28B-202ENST00000421922 ICAM4Q14773 271 aa13.09□□□□□ -0.31
CCDC28B-202ENST00000421922 AWAT1Q58HT5 328 aa13.09□□□□□ -0.31
CCDC28B-202ENST00000421922 APOHP02749 345 aaPredicted RBP13.08□□□□□ -0.32
CCDC28B-202ENST00000421922 KLF5Q13887 457 aaPredicted RBP13.08□□□□□ -0.32
CCDC28B-202ENST00000421922 RAX2Q96IS3 184 aa13.08□□□□□ -0.32
CCDC28B-202ENST00000421922 NKX6-2Q9C056 277 aaPredicted RBP13.08□□□□□ -0.32
CCDC28B-202ENST00000421922 U3KQE9 123 aa13.08□□□□□ -0.32
CCDC28B-202ENST00000421922 A0A1W2PRE2 83 aa13.07□□□□□ -0.32
CCDC28B-202ENST00000421922 FAM74A7A6NL05 159 aa13.07□□□□□ -0.32
CCDC28B-202ENST00000421922 SNRPCP09234 159 aaKnown RBP13.07□□□□□ -0.32
CCDC28B-202ENST00000421922 CEBPGP53567 150 aa13.07□□□□□ -0.32
CCDC28B-202ENST00000421922 C16orf54Q6UWD8 224 aa13.07□□□□□ -0.32
CCDC28B-202ENST00000421922 SIGLEC15Q6ZMC9 328 aa13.07□□□□□ -0.32
CCDC28B-202ENST00000421922 SUN5Q8TC36 379 aa13.07□□□□□ -0.32
CCDC28B-202ENST00000421922 RHPN1-AS1Q9BWJ2 59 aa13.07□□□□□ -0.32
CCDC28B-202ENST00000421922 SMPXQ9UHP9 88 aa13.07□□□□□ -0.32
CCDC28B-202ENST00000421922 HELTA6NFD8 242 aa13.06□□□□□ -0.32
CCDC28B-202ENST00000421922 H3BTX0 84 aa13.06□□□□□ -0.32
CCDC28B-202ENST00000421922 PDE6DO43924 150 aa13.06□□□□□ -0.32
CCDC28B-202ENST00000421922 CD5P06127 495 aa13.06□□□□□ -0.32
CCDC28B-202ENST00000421922 MEOX2P50222 304 aa13.06□□□□□ -0.32
CCDC28B-202ENST00000421922 RPL11P62913 178 aaKnown RBP13.06□□□□□ -0.32
CCDC28B-202ENST00000421922 SRSF3P84103 164 aaKnown RBP13.06□□□□□ -0.32
CCDC28B-202ENST00000421922 AAMDCQ9H7C9 122 aa13.06□□□□□ -0.32
CCDC28B-202ENST00000421922 YTHDF2Q9Y5A9 579 aaKnown RBP13.06□□□□□ -0.32
CCDC28B-202ENST00000421922 TMEM213A2RRL7 107 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 F6UZH7 168 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 PF4P02776 101 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 IGLC2P0DOY2 106 aa13.05□□□□□ -0.32
CCDC28B-202ENST00000421922 ATP5G3P48201 142 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms