RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SCGB1C1Q8TD33 95 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 ARPC5LQ9BPX5 153 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 PKHD1P08F94 4074 aa9.45□□□□□ -0.9
LINC00339-202ENST00000416769 IGHV3OR16-13A0A075B7E8 117 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 BORCS7-ASMTA0A0B4J1R7 106 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 IGHV3-74A0A0B4J1X5 117 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 UBE2L5PA0A1B0GUS4 154 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 AGPAT2O15120 278 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 RD3LP0DJH9 198 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 PSG1P11464 419 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 FGF7P21781 194 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 CAMLGP49069 296 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 ZNF90Q03938 601 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 PPP1R14BQ96C90 147 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 RNF2Q99496 336 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 MGST2Q99735 147 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 ARL6Q9H0F7 186 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 CYTL1Q9NRR1 136 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 SLC45A2Q9UMX9 530 aa9.44□□□□□ -0.9
LINC00339-202ENST00000416769 KIR2DL5BA0A0G2JN68 375 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 KIR2DL5BA0A0G2JPC4 375 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 KANTRA0A1W2PQU2 76 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 C17orf112F2Z3M2 114 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 UBE2CO00762 179 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 ATF4P18848 351 aaPredicted RBP9.43□□□□□ -0.9
LINC00339-202ENST00000416769 RPL29P47914 159 aaKnown RBP9.43□□□□□ -0.9
LINC00339-202ENST00000416769 ELLP55199 621 aaPredicted RBP9.43□□□□□ -0.9
LINC00339-202ENST00000416769 OPCMLQ14982 345 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 RPL7L1Q6DKI1 246 aaKnown RBP9.43□□□□□ -0.9
LINC00339-202ENST00000416769 LAMTOR1Q6IAA8 161 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 TOMM20LQ6UXN7 152 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 TMEM182Q6ZP80 229 aaPredicted RBP9.43□□□□□ -0.9
LINC00339-202ENST00000416769 KIR2DL5AQ8N109 375 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 BPIFCQ8NFQ6 507 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 OR51G1Q8NGK1 321 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 KIR2DL5BQ8NHK3 375 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 GATAD1Q8WUU5 269 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 NPCDR1Q9BY65 106 aa9.43□□□□□ -0.9
LINC00339-202ENST00000416769 DAZ1Q9NQZ3 744 aaKnown RBP9.43□□□□□ -0.9
LINC00339-202ENST00000416769 PUS1Q9Y606 427 aaKnown RBP eCLIP9.43□□□□□ -0.9
LINC00339-202ENST00000416769 ABCA13Q86UQ4 5058 aa9.42□□□□□ -0.9
LINC00339-202ENST00000416769 K7EMT4 169 aa9.42□□□□□ -0.9
LINC00339-202ENST00000416769 BCL2L11O43521 198 aa9.42□□□□□ -0.9
LINC00339-202ENST00000416769 C4BPBP20851 252 aa9.42□□□□□ -0.9
LINC00339-202ENST00000416769 PLP1P60201 277 aa9.42□□□□□ -0.9
LINC00339-202ENST00000416769 C9orf62Q8N4C0 152 aa9.42□□□□□ -0.9
LINC00339-202ENST00000416769 GBGT1Q8N5D6 347 aa9.42□□□□□ -0.9
LINC00339-202ENST00000416769 ZNF709Q8N972 641 aa9.42□□□□□ -0.9
LINC00339-202ENST00000416769 ZFAND3Q9H8U3 227 aa9.42□□□□□ -0.9
LINC00339-202ENST00000416769 MUC4Q99102 2169 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 DNAH11Q96DT5 4516 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 DNAH17Q9UFH2 4485 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 YIF1AO95070 293 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 LINC00869P0C866 280 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 GATA2P23769 480 aaPredicted RBP9.41□□□□□ -0.9
LINC00339-202ENST00000416769 EIF5AP63241 154 aaKnown RBP9.41□□□□□ -0.9
LINC00339-202ENST00000416769 PXDC1Q5TGL8 231 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 FAM24BQ8N5W8 94 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 OR11H2Q8NH07 326 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 C11orf45Q8TAV5 145 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 RARRES2Q99969 163 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 CSTL1Q9H114 145 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 ARV1Q9H2C2 271 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 TIMM9Q9Y5J7 89 aa9.41□□□□□ -0.9
LINC00339-202ENST00000416769 OR4C46A6NHA9 309 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 CHEK1O14757 476 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 IL4P05112 153 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 NKX2-5P52952 324 aaPredicted RBP9.4□□□□□ -0.9
LINC00339-202ENST00000416769 B2MP61769 119 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 MIC13Q5XKP0 118 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 Q6ZRG5 221 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 GNPNAT1Q96EK6 184 aaPredicted RBP9.4□□□□□ -0.9
LINC00339-202ENST00000416769 RNF125Q96EQ8 232 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 GINS3Q9BRX5 216 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 PSMG3Q9BT73 122 aaPredicted RBP9.4□□□□□ -0.9
LINC00339-202ENST00000416769 RHPN1-AS1Q9BWJ2 59 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 ZNF471Q9BX82 626 aaPredicted RBP9.4□□□□□ -0.9
LINC00339-202ENST00000416769 KCNIP2Q9NS61 270 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 SLC39A9Q9NUM3 307 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 SMPXQ9UHP9 88 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 APLNQ9ULZ1 77 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 PXMP4Q9Y6I8 212 aa9.4□□□□□ -0.9
LINC00339-202ENST00000416769 IGHV3-66A0A0C4DH42 116 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 IGHV7-4-1A0A0J9YVY3 117 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 APOHP02749 345 aaPredicted RBP9.39□□□□□ -0.91
LINC00339-202ENST00000416769 HNRNPCP07910 306 aaKnown RBP eCLIP9.39□□□□□ -0.91
LINC00339-202ENST00000416769 NPPCP23582 126 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 ATP6V0CP27449 155 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 S100A7P31151 101 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 SERF2P84101 59 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 LEMD1Q68G75 181 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 SLC51BQ86UW2 128 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 HSD17B11Q8NBQ5 300 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 RSG1Q9BU20 258 aa9.39□□□□□ -0.91
LINC00339-202ENST00000416769 ELOA3CA0A087WX78 387 aaPredicted RBP9.38□□□□□ -0.91
LINC00339-202ENST00000416769 IGLL5B9A064 214 aa9.38□□□□□ -0.91
LINC00339-202ENST00000416769 BOLA2-SMG1P6H3BVE0 249 aa9.38□□□□□ -0.91
LINC00339-202ENST00000416769 HYPMO75409 117 aa9.38□□□□□ -0.91
LINC00339-202ENST00000416769 CA1P00915 261 aaPredicted RBP9.38□□□□□ -0.91
LINC00339-202ENST00000416769 TPT1P13693 172 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms