RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DAD1P61803 113 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 POLR2GP62487 172 aaKnown RBP eCLIP8.19□□□□□ -1.1
USP4-204ENST00000416417 FCN2Q15485 313 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 BAP18Q8IXM2 172 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 BPIFCQ8NFQ6 507 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 OR11H7Q8NGC8 314 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 TMEM147Q9BVK8 224 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 SLC25A39Q9BZJ4 359 aaPredicted RBP8.19□□□□□ -1.1
USP4-204ENST00000416417 FLVCR2Q9UPI3 526 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 CRXO43186 299 aaPredicted RBP8.19□□□□□ -1.1
USP4-204ENST00000416417 SNRPCP09234 159 aaKnown RBP8.19□□□□□ -1.1
USP4-204ENST00000416417 SLC25A6P12236 298 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 AZU1P20160 251 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 AP3S2P59780 193 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 RRAS2P62070 204 aaPredicted RBP8.19□□□□□ -1.1
USP4-204ENST00000416417 SPATA31B1PQ5VZV4 182 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 IGF2BP2-AS1Q96M15 143 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 CIB3Q96Q77 187 aaPredicted RBP8.19□□□□□ -1.1
USP4-204ENST00000416417 STRAPQ9Y3F4 350 aaKnown RBP8.19□□□□□ -1.1
USP4-204ENST00000416417 TMED3Q9Y3Q3 217 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 LINC00854A0A1B0GVQ3 168 aa8.18□□□□□ -1.1
USP4-204ENST00000416417 CCDC160A6NGH7 325 aa8.18□□□□□ -1.1
USP4-204ENST00000416417 A8MTW9 85 aa8.18□□□□□ -1.1
USP4-204ENST00000416417 MEOX2P50222 304 aa8.18□□□□□ -1.1
USP4-204ENST00000416417 RPP30P78346 268 aaKnown RBP8.18□□□□□ -1.1
USP4-204ENST00000416417 LGALS9BQ3B8N2 356 aa8.18□□□□□ -1.1
USP4-204ENST00000416417 Q6ZR54 194 aa8.18□□□□□ -1.1
USP4-204ENST00000416417 CYP2G1PQ6ZSU1 146 aa8.18□□□□□ -1.1
USP4-204ENST00000416417 ZNF738Q8NE65 137 aa8.18□□□□□ -1.1
USP4-204ENST00000416417 UHRF2Q96PU4 802 aa8.18□□□□□ -1.1
USP4-204ENST00000416417 SLC25A21Q9BQT8 299 aaPredicted RBP8.18□□□□□ -1.1
USP4-204ENST00000416417 C9orf170A2RU37 121 aa8.17□□□□□ -1.1
USP4-204ENST00000416417 H3BRN7 92 aa8.17□□□□□ -1.1
USP4-204ENST00000416417 SSSCA1O60232 199 aa8.17□□□□□ -1.1
USP4-204ENST00000416417 IL5P05113 134 aa8.17□□□□□ -1.1
USP4-204ENST00000416417 OR5G3P0C626 314 aa8.17□□□□□ -1.1
USP4-204ENST00000416417 DEFB130BP0DP73 79 aa8.17□□□□□ -1.1
USP4-204ENST00000416417 DEFB130AP0DP74 79 aa8.17□□□□□ -1.1
USP4-204ENST00000416417 ZNF575Q86XF7 245 aa8.17□□□□□ -1.1
USP4-204ENST00000416417 PSENENQ9NZ42 101 aa8.17□□□□□ -1.1
USP4-204ENST00000416417 TEX48A0A1B0GUV7 120 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 CFDP00746 253 aaPredicted RBP8.16□□□□□ -1.1
USP4-204ENST00000416417 INSP01308 110 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 HTN1P15515 57 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 HIST1H1AQ02539 215 aaPredicted RBP8.16□□□□□ -1.1
USP4-204ENST00000416417 OXA1LQ15070 435 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 TMEM144Q7Z5S9 345 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 CCDC190Q86UF4 302 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 FAM210BQ96KR6 192 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 SHANK2-AS3Q9BTD1 123 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 SLC45A2Q9UMX9 530 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 HIGD1AQ9Y241 93 aa8.16□□□□□ -1.1
USP4-204ENST00000416417 DNAH11Q96DT5 4516 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 PMS2P5A8MQ11 134 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 HYPMO75409 117 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 DUSP14O95147 198 aaKnown RBP8.15□□□□□ -1.1
USP4-204ENST00000416417 SCGB1D2O95969 90 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 METTL15P1P0C7V9 234 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 LINC00869P0C866 280 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 UBE2MP61081 183 aaKnown RBP8.15□□□□□ -1.1
USP4-204ENST00000416417 RHOBP62745 196 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 ID3Q02535 119 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 BAK1Q16611 211 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 PATE2Q6UY27 113 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 OR4D5Q8NGN0 318 aa8.15□□□□□ -1.1
USP4-204ENST00000416417 PIGBOS1A0A0B4J2F0 54 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 PLAC8L1A1L4L8 177 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 F5H768 121 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 H3BTX0 84 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 BOLA2-SMG1P6H3BVE0 249 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 MED14OSP0DP75 135 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 ANXA7P20073 488 aaKnown RBP8.14□□□□□ -1.11
USP4-204ENST00000416417 S100A5P33763 92 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 RAP2BP61225 183 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 SLC38A11Q08AI6 406 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 SAMD13Q5VXD3 122 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 PARD6GQ9BYG4 376 aaPredicted RBP8.14□□□□□ -1.11
USP4-204ENST00000416417 SRRQ9GZT4 340 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 ARL6Q9H0F7 186 aa8.14□□□□□ -1.11
USP4-204ENST00000416417 NUDT3O95989 172 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 CXCL3P19876 107 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 ARL16Q0P5N6 197 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 KIR3DS1Q14943 382 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 RNF212Q495C1 297 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 C1orf134Q5TEV5 83 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 OR8A1Q8NGG7 326 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 LRRC20Q8TCA0 184 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 GPR82Q96P67 336 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 LINC01587Q99440 93 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 NACAE9PAV3 2078 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 NDUFB6O95139 128 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 OR4E1P0C645 316 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 PSG3Q16557 428 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 SMIM8Q96KF7 97 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 ATG101Q9BSB4 218 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 KRTAP4-5Q9BYR2 181 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 PPP1R14DQ9NXH3 145 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 GSKIPQ9P0R6 139 aa8.13□□□□□ -1.11
USP4-204ENST00000416417 RYR1P21817 5038 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 ABCA13Q86UQ4 5058 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms