RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 NDUFA4O00483 81 aa8.65□□□□□ -1.02
LINC00539-201ENST00000411525 CD5P06127 495 aa8.65□□□□□ -1.02
LINC00539-201ENST00000411525 KRTAP10-3P60369 221 aa8.65□□□□□ -1.02
LINC00539-201ENST00000411525 UBE2L3P68036 154 aaKnown RBP8.65□□□□□ -1.02
LINC00539-201ENST00000411525 ICAM4Q14773 271 aa8.65□□□□□ -1.02
LINC00539-201ENST00000411525 NARS2Q96I59 477 aaKnown RBP8.65□□□□□ -1.02
LINC00539-201ENST00000411525 RARRES2Q99969 163 aa8.65□□□□□ -1.02
LINC00539-201ENST00000411525 PAXXQ9BUH6 204 aa8.65□□□□□ -1.02
LINC00539-201ENST00000411525 SMDT1Q9H4I9 107 aa8.65□□□□□ -1.02
LINC00539-201ENST00000411525 RNF24Q9Y225 148 aa8.65□□□□□ -1.02
LINC00539-201ENST00000411525 IGHV3OR16-8A0A075B7F1 116 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 ZNF98A6NK75 572 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 OR10J4P0C629 311 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 PYYP10082 97 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 GP9P14770 177 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 TCTEX1D4Q5JR98 221 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 KHDC1LQ5JSQ8 128 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 LEMD1Q68G75 181 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 SUN5Q8TC36 379 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 RXFP4Q8TDU9 374 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 TMEM190Q8WZ59 177 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 FXYD5Q96DB9 178 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 METTL26Q96S19 204 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 OR51M1Q9H341 326 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 TMEM14CQ9P0S9 112 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 VAX2Q9UIW0 290 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 ARL2-SNX15V9GYD0 113 aa8.64□□□□□ -1.03
LINC00539-201ENST00000411525 IGHV4OR15-8A0A075B7B6 117 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 A0A087WW49 117 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 C9JQL5 133 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 PAGE4O60829 102 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 HSPB1P04792 205 aaKnown RBP8.63□□□□□ -1.03
LINC00539-201ENST00000411525 ZP3P21754 424 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 S100A1P23297 94 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 CDX1P47902 265 aaPredicted RBP8.63□□□□□ -1.03
LINC00539-201ENST00000411525 UBE2G2P60604 165 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 BPIFA4PQ86YQ2 179 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 C4orf3Q8WVX3 66 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 C20orf24Q9BUV8 137 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 NOTCH3Q9UM47 2321 aa8.63□□□□□ -1.03
LINC00539-201ENST00000411525 TMEM218A2RU14 115 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 FAM74A7A6NL05 159 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 KRBOX1C9JBD0 128 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 NDUFS6O75380 124 aaKnown RBP8.62□□□□□ -1.03
LINC00539-201ENST00000411525 SRP19P09132 144 aaKnown RBP8.62□□□□□ -1.03
LINC00539-201ENST00000411525 SFTA3P0C7M3 94 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 RPL7P18124 248 aaKnown RBP8.62□□□□□ -1.03
LINC00539-201ENST00000411525 CRYBB3P26998 211 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 MEF2BQ02080 365 aaPredicted RBP8.62□□□□□ -1.03
LINC00539-201ENST00000411525 RPEL1Q2QD12 228 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 UNQ9165/PRO28630Q6UXU0 137 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 C18orf65Q6ZTR6 163 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 C1QL4Q86Z23 238 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 KLHL30-AS1Q8NEE0 82 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 LINC00052Q96N35 136 aa8.62□□□□□ -1.03
LINC00539-201ENST00000411525 YTHDF2Q9Y5A9 579 aaKnown RBP8.62□□□□□ -1.03
LINC00539-201ENST00000411525 C11orf94C9JXX5 98 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 MRPS12O15235 138 aaKnown RBP8.61□□□□□ -1.03
LINC00539-201ENST00000411525 ZNF207O43670 478 aaKnown RBP8.61□□□□□ -1.03
LINC00539-201ENST00000411525 IGLC2P0DOY2 106 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 CD28P10747 220 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 NPPCP23582 126 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 ATP5G3P48201 142 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 CD81P60033 236 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 FAM106AQ4KMX7 169 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 CST9LP1Q5W188 147 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 REC114Q7Z4M0 266 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 GPHB5Q86YW7 130 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 OR4F17Q8NGA8 305 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 OR4F4Q96R69 305 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 TXNDC17Q9BRA2 123 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 SLC35B3Q9H1N7 401 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 U3KQE9 123 aa8.61□□□□□ -1.03
LINC00539-201ENST00000411525 A0A1W2PRE2 83 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 ZNF320A2RRD8 509 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 BUB3O43684 328 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 HIST1H1EP10412 219 aaKnown RBP8.6□□□□□ -1.03
LINC00539-201ENST00000411525 ADCYAP1P18509 176 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 HOXD3P31249 432 aaPredicted RBP8.6□□□□□ -1.03
LINC00539-201ENST00000411525 DEFB136Q30KP8 78 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 C1orf194Q5T5A4 169 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 OR8I2Q8N0Y5 310 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 C11orf44Q8N8P7 122 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 CYB561D1Q8N8Q1 229 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 BLNKQ8WV28 456 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 CITED2Q99967 270 aaPredicted RBP8.6□□□□□ -1.03
LINC00539-201ENST00000411525 DAZ1Q9NQZ3 744 aaKnown RBP8.6□□□□□ -1.03
LINC00539-201ENST00000411525 UFC1Q9Y3C8 167 aa8.6□□□□□ -1.03
LINC00539-201ENST00000411525 TSSC4Q9Y5U2 329 aaPredicted RBP8.6□□□□□ -1.03
LINC00539-201ENST00000411525 IGHV3-49A0A0A0MS15 119 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 IGHV3-66A0A0C4DH42 116 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 A8MWP6 167 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 GGTLC3B5MD39 225 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 F6UZH7 168 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 F8W036 122 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 LINC01619G3V211 115 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 H3BQ15 152 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 K7EMT4 169 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 PDE6DO43924 150 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 APOHP02749 345 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms