RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ZNF506Q5JVG8 444 aa2.86□□□□□ -1.95
RTN4-208ENST00000404909 S100A7AQ86SG5 101 aa2.86□□□□□ -1.95
RTN4-208ENST00000404909 CYB561D1Q8N8Q1 229 aa2.86□□□□□ -1.95
RTN4-208ENST00000404909 METTL26Q96S19 204 aa2.86□□□□□ -1.95
RTN4-208ENST00000404909 SHANK2-AS3Q9BTD1 123 aa2.86□□□□□ -1.95
RTN4-208ENST00000404909 SLC35B3Q9H1N7 401 aa2.86□□□□□ -1.95
RTN4-208ENST00000404909 MANBALQ9NQG1 85 aa2.86□□□□□ -1.95
RTN4-208ENST00000404909 TMEM167BQ9NRX6 74 aa2.86□□□□□ -1.95
RTN4-208ENST00000404909 YTHDF2Q9Y5A9 579 aaKnown RBP2.86□□□□□ -1.95
RTN4-208ENST00000404909 SORL1Q92673 2214 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 TMEM89A2RUT3 159 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 KRBOX1C9JBD0 128 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 H3BRN7 92 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 APOHP02749 345 aaPredicted RBP2.85□□□□□ -1.95
RTN4-208ENST00000404909 PRB4P10163 310 aaPredicted RBP2.85□□□□□ -1.95
RTN4-208ENST00000404909 NPPCP23582 126 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 TCTEX1D4Q5JR98 221 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 SOHLH1Q5JUK2 328 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 BPIFA4PQ86YQ2 179 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 LINC00469Q8N7U9 141 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 STXBP6Q8NFX7 210 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 UBE2E2Q96LR5 201 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 DUX3Q96PT4 197 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 ZFAND3Q9H8U3 227 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 SRP19P09132 144 aaKnown RBP2.85□□□□□ -1.95
RTN4-208ENST00000404909 LGALS1P09382 135 aaKnown RBP2.85□□□□□ -1.95
RTN4-208ENST00000404909 NBEAP1P0C6P0 100 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 CD28P10747 220 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 ADCYAP1P18509 176 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 CD81P60033 236 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 SUMO1P63165 101 aaKnown RBP2.85□□□□□ -1.95
RTN4-208ENST00000404909 FAM106AQ4KMX7 169 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 FAM209BQ5JX69 171 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 KLHL30-AS1Q8NEE0 82 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 OR4F17Q8NGA8 305 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 RPUSD4Q96CM3 377 aaKnown RBP2.85□□□□□ -1.95
RTN4-208ENST00000404909 FXYD5Q96DB9 178 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 RNF114Q9Y508 228 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 COL6A5A8TX70 2615 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 IGHV4OR15-8A0A075B7B6 117 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 A0A087WW49 117 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 CLPSL1A2RUU4 121 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 FAM74A7A6NL05 159 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 H3BQ15 152 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 NDUFA4O00483 81 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 GP9P14770 177 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 ZP3P21754 424 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 SYNJ2BPP57105 145 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 RPL11P62913 178 aaKnown RBP2.85□□□□□ -1.95
RTN4-208ENST00000404909 TM4SF20Q53R12 229 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 ZNF414Q96IQ9 312 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 C17orf77Q96MU5 243 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 ATP6V0BQ99437 205 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 RPH3ALQ9UNE2 315 aa2.85□□□□□ -1.95
RTN4-208ENST00000404909 IGKV3-7A0A075B6H7 116 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 NDUFB4O95168 129 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 RPL7P18124 248 aaKnown RBP2.84□□□□□ -1.95
RTN4-208ENST00000404909 S100A7P31151 101 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 HOXD3P31249 432 aaPredicted RBP2.84□□□□□ -1.95
RTN4-208ENST00000404909 TAGLN2P37802 199 aaKnown RBP2.84□□□□□ -1.95
RTN4-208ENST00000404909 GUCA2BQ16661 112 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 C8orf86Q6ZUL3 223 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 RNF152Q8N8N0 203 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 OR11H1Q8NG94 326 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 DPF1Q92782 380 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 CITED2Q99967 270 aaPredicted RBP2.84□□□□□ -1.95
RTN4-208ENST00000404909 ZNF586Q9NXT0 402 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 STAB1Q9NY15 2570 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 SCO2A0A1W2PP80 73 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 ZNF785A8K8V0 405 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 GGTLC3B5MD39 225 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 BUB3O43684 328 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 HIST1H1EP10412 219 aaKnown RBP2.84□□□□□ -1.95
RTN4-208ENST00000404909 ATF4P18848 351 aaPredicted RBP2.84□□□□□ -1.95
RTN4-208ENST00000404909 CDX1P47902 265 aaPredicted RBP2.84□□□□□ -1.95
RTN4-208ENST00000404909 PMS2P11Q13670 270 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 MYOZ3Q8TDC0 251 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 TMEM190Q8WZ59 177 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 SEC11CQ9BY50 192 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 SMDT1Q9H4I9 107 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 C16orf95Q9H693 158 aa2.84□□□□□ -1.95
RTN4-208ENST00000404909 DAZ1Q9NQZ3 744 aaKnown RBP2.84□□□□□ -1.95
RTN4-208ENST00000404909 PGPA6NDG6 321 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 ZNF727A8MUV8 499 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 M0R036 132 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 SLC17A3O00476 420 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 PDE6DO43924 150 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 SCO1O75880 301 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 EDN2P20800 178 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 CRYBB3P26998 211 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 SLURP1P55000 103 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 IGFL4Q6B9Z1 124 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 EXOC3-AS1Q8N2X6 119 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 OR1N2Q8NGR9 330 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 C4orf3Q8WVX3 66 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 SMIM7Q9BQ49 75 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 DERL1Q9BUN8 251 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 TMEM14CQ9P0S9 112 aa2.84□□□□□ -1.96
RTN4-208ENST00000404909 A0A1W2PRE2 83 aa2.83□□□□□ -1.96
RTN4-208ENST00000404909 NDUFA7O95182 113 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms