RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 NRN1Q9NPD7 142 aa20.78■□□□□ 0.92
HMGB1-205ENST00000399494 VPS13DQ5THJ4 4388 aa20.78■□□□□ 0.92
HMGB1-205ENST00000399494 AGPAT2O15120 278 aa20.77■□□□□ 0.92
HMGB1-205ENST00000399494 RAP2BP61225 183 aa20.77■□□□□ 0.92
HMGB1-205ENST00000399494 PRR20EP86478 221 aa20.77■□□□□ 0.92
HMGB1-205ENST00000399494 PRR20CP86479 221 aa20.77■□□□□ 0.92
HMGB1-205ENST00000399494 PRR20DP86480 221 aa20.77■□□□□ 0.92
HMGB1-205ENST00000399494 PRR20BP86481 221 aa20.77■□□□□ 0.92
HMGB1-205ENST00000399494 PRR20AP86496 221 aa20.77■□□□□ 0.92
HMGB1-205ENST00000399494 SLC25A22Q9H936 323 aa20.77■□□□□ 0.92
HMGB1-205ENST00000399494 OR5G3P0C626 314 aa20.76■□□□□ 0.91
HMGB1-205ENST00000399494 ZNF688P0C7X2 276 aa20.76■□□□□ 0.91
HMGB1-205ENST00000399494 RAB31Q13636 194 aa20.76■□□□□ 0.91
HMGB1-205ENST00000399494 MED28Q9H204 178 aa20.76■□□□□ 0.91
HMGB1-205ENST00000399494 HIGD1AQ9Y241 93 aa20.76■□□□□ 0.91
HMGB1-205ENST00000399494 UBE2L5PA0A1B0GUS4 154 aa20.75■□□□□ 0.91
HMGB1-205ENST00000399494 DEFB4AO15263 64 aa20.75■□□□□ 0.91
HMGB1-205ENST00000399494 HYPMO75409 117 aa20.75■□□□□ 0.91
HMGB1-205ENST00000399494 CA1P00915 261 aaPredicted RBP20.75■□□□□ 0.91
HMGB1-205ENST00000399494 LEMD1Q68G75 181 aa20.75■□□□□ 0.91
HMGB1-205ENST00000399494 C2CD4CQ8TF44 421 aa20.75■□□□□ 0.91
HMGB1-205ENST00000399494 ARL6Q9H0F7 186 aa20.75■□□□□ 0.91
HMGB1-205ENST00000399494 ZNF98A6NK75 572 aa20.74■□□□□ 0.91
HMGB1-205ENST00000399494 H0YIZ8 118 aa20.74■□□□□ 0.91
HMGB1-205ENST00000399494 BAXQ07812 192 aa20.74■□□□□ 0.91
HMGB1-205ENST00000399494 ATP6V1FQ16864 119 aa20.74■□□□□ 0.91
HMGB1-205ENST00000399494 S100A7AQ86SG5 101 aa20.74■□□□□ 0.91
HMGB1-205ENST00000399494 MGST2Q99735 147 aa20.74■□□□□ 0.91
HMGB1-205ENST00000399494 MPC2O95563 127 aa20.73■□□□□ 0.91
HMGB1-205ENST00000399494 CAMLGP49069 296 aa20.73■□□□□ 0.91
HMGB1-205ENST00000399494 TCTAP57738 103 aa20.73■□□□□ 0.91
HMGB1-205ENST00000399494 PLP1P60201 277 aa20.73■□□□□ 0.91
HMGB1-205ENST00000399494 SNRPD3P62318 126 aaKnown RBP20.73■□□□□ 0.91
HMGB1-205ENST00000399494 NHLH2Q02577 135 aa20.73■□□□□ 0.91
HMGB1-205ENST00000399494 HECTD4Q9Y4D8 3996 aa20.73■□□□□ 0.91
HMGB1-205ENST00000399494 GALR1P47211 349 aa20.72■□□□□ 0.91
HMGB1-205ENST00000399494 VWC2Q2TAL6 325 aa20.72■□□□□ 0.91
HMGB1-205ENST00000399494 PXDC1Q5TGL8 231 aa20.72■□□□□ 0.91
HMGB1-205ENST00000399494 SLC25A39Q9BZJ4 359 aaPredicted RBP20.72■□□□□ 0.91
HMGB1-205ENST00000399494 SLC25A32Q9H2D1 315 aa20.72■□□□□ 0.91
HMGB1-205ENST00000399494 WDR83OSQ9Y284 106 aa20.72■□□□□ 0.91
HMGB1-205ENST00000399494 CXCL3P19876 107 aa20.71■□□□□ 0.91
HMGB1-205ENST00000399494 PSMG4Q5JS54 123 aa20.71■□□□□ 0.91
HMGB1-205ENST00000399494 GPR82Q96P67 336 aa20.71■□□□□ 0.91
HMGB1-205ENST00000399494 SCRT1Q9BWW7 348 aa20.71■□□□□ 0.91
HMGB1-205ENST00000399494 H3BRN7 92 aa20.7■□□□□ 0.9
HMGB1-205ENST00000399494 FGF7P21781 194 aa20.7■□□□□ 0.9
HMGB1-205ENST00000399494 STHQ8IWL8 128 aa20.7■□□□□ 0.9
HMGB1-205ENST00000399494 OR5C1Q8NGR4 320 aa20.7■□□□□ 0.9
HMGB1-205ENST00000399494 APLNQ9ULZ1 77 aa20.7■□□□□ 0.9
HMGB1-205ENST00000399494 ID1P41134 155 aa20.69■□□□□ 0.9
HMGB1-205ENST00000399494 FCN2Q15485 313 aa20.69■□□□□ 0.9
HMGB1-205ENST00000399494 UHRF2Q96PU4 802 aa20.69■□□□□ 0.9
HMGB1-205ENST00000399494 SHANK2-AS3Q9BTD1 123 aa20.69■□□□□ 0.9
HMGB1-205ENST00000399494 RNF126Q9BV68 326 aa20.69■□□□□ 0.9
HMGB1-205ENST00000399494 ARV1Q9H2C2 271 aa20.69■□□□□ 0.9
HMGB1-205ENST00000399494 SEPSECSQ9HD40 501 aaKnown RBP20.69■□□□□ 0.9
HMGB1-205ENST00000399494 COX7A2P2O60397 106 aa20.68■□□□□ 0.9
HMGB1-205ENST00000399494 Q6ZRG5 221 aa20.68■□□□□ 0.9
HMGB1-205ENST00000399494 Q8NAQ8 132 aa20.68■□□□□ 0.9
HMGB1-205ENST00000399494 MBD2Q9UBB5 411 aa20.68■□□□□ 0.9
HMGB1-205ENST00000399494 RNF24Q9Y225 148 aa20.68■□□□□ 0.9
HMGB1-205ENST00000399494 DNAH6Q9C0G6 4158 aa20.68■□□□□ 0.9
HMGB1-205ENST00000399494 AGRNO00468 2067 aa20.68■□□□□ 0.9
HMGB1-205ENST00000399494 IGLL5B9A064 214 aa20.67■□□□□ 0.9
HMGB1-205ENST00000399494 GIG44P09565 113 aaPredicted RBP20.67■□□□□ 0.9
HMGB1-205ENST00000399494 CLINT1Q14677 625 aa20.67■□□□□ 0.9
HMGB1-205ENST00000399494 OR11H7Q8NGC8 314 aa20.67■□□□□ 0.9
HMGB1-205ENST00000399494 HRH4Q9H3N8 390 aa20.67■□□□□ 0.9
HMGB1-205ENST00000399494 MPDU1O75352 247 aa20.66■□□□□ 0.9
HMGB1-205ENST00000399494 MEOX2P50222 304 aa20.66■□□□□ 0.9
HMGB1-205ENST00000399494 SAMD13Q5VXD3 122 aa20.66■□□□□ 0.9
HMGB1-205ENST00000399494 MIC13Q5XKP0 118 aa20.66■□□□□ 0.9
HMGB1-205ENST00000399494 THAP6Q8TBB0 222 aa20.66■□□□□ 0.9
HMGB1-205ENST00000399494 RSG1Q9BU20 258 aa20.66■□□□□ 0.9
HMGB1-205ENST00000399494 KNCNA6PVL3 124 aa20.65■□□□□ 0.9
HMGB1-205ENST00000399494 C11orf94C9JXX5 98 aa20.65■□□□□ 0.9
HMGB1-205ENST00000399494 RBMY1A1P0DJD3 496 aaKnown RBP20.65■□□□□ 0.9
HMGB1-205ENST00000399494 RBMY1CP0DJD4 496 aa20.65■□□□□ 0.9
HMGB1-205ENST00000399494 RPL7P18124 248 aaKnown RBP20.65■□□□□ 0.9
HMGB1-205ENST00000399494 PSMB3P49720 205 aa20.65■□□□□ 0.9
HMGB1-205ENST00000399494 OXA1LQ15070 435 aa20.65■□□□□ 0.9
HMGB1-205ENST00000399494 RBMY1FQ15415 496 aaKnown RBP20.65■□□□□ 0.9
HMGB1-205ENST00000399494 ACTL10Q5JWF8 245 aa20.65■□□□□ 0.9
HMGB1-205ENST00000399494 PATE2Q6UY27 113 aa20.65■□□□□ 0.9
HMGB1-205ENST00000399494 LINC00305Q7Z4B0 112 aa20.65■□□□□ 0.9
HMGB1-205ENST00000399494 LINC00052Q96N35 136 aa20.65■□□□□ 0.9
HMGB1-205ENST00000399494 ELOA3CA0A087WX78 387 aaPredicted RBP20.64■□□□□ 0.89
HMGB1-205ENST00000399494 RPL12P30050 165 aaKnown RBP20.64■□□□□ 0.89
HMGB1-205ENST00000399494 OPCMLQ14982 345 aa20.64■□□□□ 0.89
HMGB1-205ENST00000399494 C10orf113Q5VZT2 155 aa20.64■□□□□ 0.89
HMGB1-205ENST00000399494 C16orf92Q96LL3 132 aa20.64■□□□□ 0.89
HMGB1-205ENST00000399494 RPL29P47914 159 aaKnown RBP20.63■□□□□ 0.89
HMGB1-205ENST00000399494 B2MP61769 119 aa20.63■□□□□ 0.89
HMGB1-205ENST00000399494 TRPT1Q86TN4 253 aaKnown RBP20.63■□□□□ 0.89
HMGB1-205ENST00000399494 OR1L4Q8NGR5 311 aa20.63■□□□□ 0.89
HMGB1-205ENST00000399494 HSPB11Q9Y547 144 aa20.63■□□□□ 0.89
HMGB1-205ENST00000399494 IGHV4-28A0A0C4DH34 117 aa20.62■□□□□ 0.89
HMGB1-205ENST00000399494 ISLRO14498 428 aa20.62■□□□□ 0.89
HMGB1-205ENST00000399494 FGL1Q08830 312 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms