RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 HSPB11Q9Y547 144 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 PXMP4Q9Y6I8 212 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 DNAH7Q8WXX0 4024 aa9.85□□□□□ -0.83
VPS28-202ENST00000377348 GIPP09681 153 aaPredicted RBP9.84□□□□□ -0.83
VPS28-202ENST00000377348 S100A7P31151 101 aa9.84□□□□□ -0.83
VPS28-202ENST00000377348 RPL29P47914 159 aaKnown RBP9.84□□□□□ -0.83
VPS28-202ENST00000377348 APOC4P55056 127 aa9.84□□□□□ -0.83
VPS28-202ENST00000377348 B2MP61769 119 aa9.84□□□□□ -0.83
VPS28-202ENST00000377348 SNRPD3P62318 126 aaKnown RBP9.84□□□□□ -0.83
VPS28-202ENST00000377348 ACTL10Q5JWF8 245 aa9.84□□□□□ -0.83
VPS28-202ENST00000377348 PXDC1Q5TGL8 231 aa9.84□□□□□ -0.83
VPS28-202ENST00000377348 MORN5Q5VZ52 161 aa9.84□□□□□ -0.83
VPS28-202ENST00000377348 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.84□□□□□ -0.83
VPS28-202ENST00000377348 LINC00052Q96N35 136 aa9.84□□□□□ -0.83
VPS28-202ENST00000377348 SLC39A9Q9NUM3 307 aa9.84□□□□□ -0.83
VPS28-202ENST00000377348 SNRPCP09234 159 aaKnown RBP9.83□□□□□ -0.84
VPS28-202ENST00000377348 FGL1Q08830 312 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 DEFB135Q30KP9 77 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 GCSAMLQ5JQS6 135 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 C10orf113Q5VZT2 155 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 IGFL4Q6B9Z1 124 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 Q6ZRG5 221 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 STHQ8IWL8 128 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 CHAC2Q8WUX2 184 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 C16orf92Q96LL3 132 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 GPR82Q96P67 336 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 ATP5SQ99766 215 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 WDR61Q9GZS3 305 aaKnown RBP9.83□□□□□ -0.84
VPS28-202ENST00000377348 WFDC1Q9HC57 220 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 AGRNO00468 2067 aa9.83□□□□□ -0.84
VPS28-202ENST00000377348 TRAV5A0A0B4J249 113 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 KIR2DL5BA0A0G2JN68 375 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 KIR2DL5BA0A0G2JPC4 375 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 MPDU1O75352 247 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 RPL7P18124 248 aaKnown RBP9.82□□□□□ -0.84
VPS28-202ENST00000377348 ATF4P18848 351 aaPredicted RBP9.82□□□□□ -0.84
VPS28-202ENST00000377348 ID1P41134 155 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 GDF5OSQ5U4N7 250 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 TRPT1Q86TN4 253 aaKnown RBP9.82□□□□□ -0.84
VPS28-202ENST00000377348 KIR2DL5AQ8N109 375 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 KIR2DL5BQ8NHK3 375 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 C20orf173Q96LM9 149 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 WWC2-AS2Q96NR7 200 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 OVOL2Q9BRP0 275 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 CSTL1Q9H114 145 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 SEPSECSQ9HD40 501 aaKnown RBP9.82□□□□□ -0.84
VPS28-202ENST00000377348 DNAJC4Q9NNZ3 241 aa9.82□□□□□ -0.84
VPS28-202ENST00000377348 ELOA3CA0A087WX78 387 aaPredicted RBP9.81□□□□□ -0.84
VPS28-202ENST00000377348 TRAV8-2A0A0B4J237 113 aa9.81□□□□□ -0.84
VPS28-202ENST00000377348 UBE2CO00762 179 aa9.81□□□□□ -0.84
VPS28-202ENST00000377348 MRPS12O15235 138 aaKnown RBP9.81□□□□□ -0.84
VPS28-202ENST00000377348 PSMB3P49720 205 aa9.81□□□□□ -0.84
VPS28-202ENST00000377348 S100A7AQ86SG5 101 aa9.81□□□□□ -0.84
VPS28-202ENST00000377348 OR1L4Q8NGR5 311 aa9.81□□□□□ -0.84
VPS28-202ENST00000377348 F6UB75 175 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 H3BTX0 84 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 ISLRO14498 428 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 CA1P00915 261 aaPredicted RBP9.8□□□□□ -0.84
VPS28-202ENST00000377348 PRB4P10163 310 aaPredicted RBP9.8□□□□□ -0.84
VPS28-202ENST00000377348 MEOX2P50222 304 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 Q6ZWC4 215 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 RNF182Q8N6D2 247 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 OR2T35Q8NGX2 323 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 ASB13Q8WXK3 278 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 PFDN5Q99471 154 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 RFNGQ9Y644 331 aa9.8□□□□□ -0.84
VPS28-202ENST00000377348 FXYD6-FXYD2A0A087WZ82 144 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 A0A087X0K7 114 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 G3V3Q6 166 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 H3BMM0 161 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 SPRY2O43597 315 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 IFNA5P01569 189 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 IGKV3-20P01619 116 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 C4BPBP20851 252 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 HLA-DMBP28068 263 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 SPATA31B1PQ5VZV4 182 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 BPIFA4PQ86YQ2 179 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 ZNF709Q8N972 641 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 RNF183Q96D59 192 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 AQP10Q96PS8 301 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 EDA2RQ9HAV5 297 aa9.79□□□□□ -0.84
VPS28-202ENST00000377348 C17orf112F2Z3M2 114 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 SMLR1H3BR10 107 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 GIG44P09565 113 aaPredicted RBP9.78□□□□□ -0.84
VPS28-202ENST00000377348 HLA-DRB4P13762 266 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 Q6ZNX1 250 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 FOXI2Q6ZQN5 318 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 SCGB1C1Q8TD33 95 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 GATAD1Q8WUU5 269 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 SAV1Q9H4B6 383 aaPredicted RBP9.78□□□□□ -0.84
VPS28-202ENST00000377348 RNF24Q9Y225 148 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 TP53TG1Q9Y2A0 90 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 HLA-DRB4X5D2U9 266 aa9.78□□□□□ -0.84
VPS28-202ENST00000377348 RNF222A6NCQ9 220 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 H3BQ15 152 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 SLC17A3O00476 420 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 IGLC2P0DOY2 106 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 FAM78BQ5VT40 261 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 SAMD13Q5VXD3 122 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 MIR17HGQ75NE6 70 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms