RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 TP53TG1Q9Y2A0 90 aa12.5□□□□□ -0.41
CLN3-203ENST00000357806 STAB2Q8WWQ8 2551 aa12.5□□□□□ -0.41
CLN3-203ENST00000357806 ELOA3CA0A087WX78 387 aaPredicted RBP12.49□□□□□ -0.41
CLN3-203ENST00000357806 SOCS3O14543 225 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 RPL29P47914 159 aaKnown RBP12.49□□□□□ -0.41
CLN3-203ENST00000357806 PRR20EP86478 221 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 PRR20CP86479 221 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 PRR20DP86480 221 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 PRR20BP86481 221 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 PRR20AP86496 221 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 OPCMLQ14982 345 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 OXA1LQ15070 435 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 FCN2Q15485 313 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 ACTL10Q5JWF8 245 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 MIC13Q5XKP0 118 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 PATE2Q6UY27 113 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 LINC00305Q7Z4B0 112 aa12.49□□□□□ -0.41
CLN3-203ENST00000357806 KNCNA6PVL3 124 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 ISLRO14498 428 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 ATF4P18848 351 aaPredicted RBP12.48□□□□□ -0.41
CLN3-203ENST00000357806 B2MP61769 119 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 CLINT1Q14677 625 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 C10orf113Q5VZT2 155 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 TRPT1Q86TN4 253 aaKnown RBP12.48□□□□□ -0.41
CLN3-203ENST00000357806 OR1L4Q8NGR5 311 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 THAP6Q8TBB0 222 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 CHAC2Q8WUX2 184 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 PFDN5Q99471 154 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 OVOL2Q9BRP0 275 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 RSG1Q9BU20 258 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 HSPB11Q9Y547 144 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 NBEAL2Q6ZNJ1 2754 aa12.48□□□□□ -0.41
CLN3-203ENST00000357806 SPRY2O43597 315 aa12.47□□□□□ -0.41
CLN3-203ENST00000357806 RPL12P30050 165 aaKnown RBP12.47□□□□□ -0.41
CLN3-203ENST00000357806 ASB13Q8WXK3 278 aa12.47□□□□□ -0.41
CLN3-203ENST00000357806 TMEM37Q8WXS4 190 aa12.47□□□□□ -0.41
CLN3-203ENST00000357806 C16orf92Q96LL3 132 aa12.47□□□□□ -0.41
CLN3-203ENST00000357806 LINC00052Q96N35 136 aa12.47□□□□□ -0.41
CLN3-203ENST00000357806 NPCDR1Q9BY65 106 aa12.47□□□□□ -0.41
CLN3-203ENST00000357806 EDA2RQ9HAV5 297 aa12.47□□□□□ -0.41
CLN3-203ENST00000357806 PXMP4Q9Y6I8 212 aa12.47□□□□□ -0.41
CLN3-203ENST00000357806 CA1P00915 261 aaPredicted RBP12.46□□□□□ -0.41
CLN3-203ENST00000357806 SPP1P10451 314 aa12.46□□□□□ -0.41
CLN3-203ENST00000357806 LYL1P12980 280 aa12.46□□□□□ -0.41
CLN3-203ENST00000357806 MORN3Q6PF18 240 aaPredicted RBP12.46□□□□□ -0.41
CLN3-203ENST00000357806 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.46□□□□□ -0.41
CLN3-203ENST00000357806 RNF183Q96D59 192 aa12.46□□□□□ -0.41
CLN3-203ENST00000357806 ATP5SQ99766 215 aa12.46□□□□□ -0.41
CLN3-203ENST00000357806 SLC39A9Q9NUM3 307 aa12.46□□□□□ -0.41
CLN3-203ENST00000357806 FGL1Q08830 312 aa12.46□□□□□ -0.42
CLN3-203ENST00000357806 WDR61Q9GZS3 305 aaKnown RBP12.46□□□□□ -0.42
CLN3-203ENST00000357806 DNAJC4Q9NNZ3 241 aa12.46□□□□□ -0.42
CLN3-203ENST00000357806 KCNIP2Q9NS61 270 aa12.46□□□□□ -0.42
CLN3-203ENST00000357806 A0A087X0K7 114 aa12.45□□□□□ -0.42
CLN3-203ENST00000357806 GIPP09681 153 aaPredicted RBP12.45□□□□□ -0.42
CLN3-203ENST00000357806 HLA-DRB4P13762 266 aa12.45□□□□□ -0.42
CLN3-203ENST00000357806 TMEM41BQ5BJD5 291 aa12.45□□□□□ -0.42
CLN3-203ENST00000357806 BPIFA4PQ86YQ2 179 aa12.45□□□□□ -0.42
CLN3-203ENST00000357806 C17orf77Q96MU5 243 aa12.45□□□□□ -0.42
CLN3-203ENST00000357806 RPRMQ9NS64 109 aa12.45□□□□□ -0.42
CLN3-203ENST00000357806 HLA-DRB4X5D2U9 266 aa12.45□□□□□ -0.42
CLN3-203ENST00000357806 DNAH7Q8WXX0 4024 aa12.44□□□□□ -0.42
CLN3-203ENST00000357806 FOXI2Q6ZQN5 318 aa12.44□□□□□ -0.42
CLN3-203ENST00000357806 ZNF709Q8N972 641 aa12.44□□□□□ -0.42
CLN3-203ENST00000357806 MUC7Q8TAX7 377 aa12.44□□□□□ -0.42
CLN3-203ENST00000357806 GATAD1Q8WUU5 269 aa12.44□□□□□ -0.42
CLN3-203ENST00000357806 SAV1Q9H4B6 383 aaPredicted RBP12.44□□□□□ -0.42
CLN3-203ENST00000357806 C17orf112F2Z3M2 114 aa12.43□□□□□ -0.42
CLN3-203ENST00000357806 H3BMM0 161 aa12.43□□□□□ -0.42
CLN3-203ENST00000357806 MRPS12O15235 138 aaKnown RBP12.43□□□□□ -0.42
CLN3-203ENST00000357806 NUTF2P61970 127 aaKnown RBP12.43□□□□□ -0.42
CLN3-203ENST00000357806 MORN5Q5VZ52 161 aa12.43□□□□□ -0.42
CLN3-203ENST00000357806 SMIM3Q9BZL3 60 aa12.43□□□□□ -0.42
CLN3-203ENST00000357806 IFNA5P01569 189 aa12.42□□□□□ -0.42
CLN3-203ENST00000357806 CXCL2P19875 107 aa12.42□□□□□ -0.42
CLN3-203ENST00000357806 C4BPBP20851 252 aa12.42□□□□□ -0.42
CLN3-203ENST00000357806 GDF5OSQ5U4N7 250 aa12.42□□□□□ -0.42
CLN3-203ENST00000357806 SPATA31B1PQ5VZV4 182 aa12.42□□□□□ -0.42
CLN3-203ENST00000357806 EBLN2Q6P2I7 272 aa12.42□□□□□ -0.42
CLN3-203ENST00000357806 LCN15Q6UWW0 184 aa12.42□□□□□ -0.42
CLN3-203ENST00000357806 C3orf84H3BNL1 204 aa12.41□□□□□ -0.42
CLN3-203ENST00000357806 LRRC20Q8TCA0 184 aa12.41□□□□□ -0.42
CLN3-203ENST00000357806 C20orf173Q96LM9 149 aa12.41□□□□□ -0.42
CLN3-203ENST00000357806 TRAV8-2A0A0B4J237 113 aa12.4□□□□□ -0.42
CLN3-203ENST00000357806 DEFB1P60022 68 aa12.4□□□□□ -0.42
CLN3-203ENST00000357806 SCGB1C1Q8TD33 95 aa12.4□□□□□ -0.42
CLN3-203ENST00000357806 SLC50A1Q9BRV3 221 aa12.4□□□□□ -0.42
CLN3-203ENST00000357806 C1QTNF4Q9BXJ3 329 aa12.4□□□□□ -0.42
CLN3-203ENST00000357806 GIG44P09565 113 aaPredicted RBP12.4□□□□□ -0.43
CLN3-203ENST00000357806 RNF182Q8N6D2 247 aa12.4□□□□□ -0.43
CLN3-203ENST00000357806 OR4B1Q8NGF8 309 aa12.4□□□□□ -0.43
CLN3-203ENST00000357806 CLUHP3Q96NS8 147 aa12.4□□□□□ -0.43
CLN3-203ENST00000357806 AQP10Q96PS8 301 aa12.4□□□□□ -0.43
CLN3-203ENST00000357806 RARRES2Q99969 163 aa12.4□□□□□ -0.43
CLN3-203ENST00000357806 PARD6GQ9BYG4 376 aaPredicted RBP12.4□□□□□ -0.43
CLN3-203ENST00000357806 HRH4Q9H3N8 390 aa12.4□□□□□ -0.43
CLN3-203ENST00000357806 TRAV5A0A0B4J249 113 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 A0A0J9YX75 114 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 F6UB75 175 aa12.39□□□□□ -0.43
CLN3-203ENST00000357806 IGKV3-20P01619 116 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms