RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 WDR86Q86TI4 376 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 IGHV1-69DA0A0B4J2H0 117 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 IGHV4-61A0A0C4DH41 118 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A10PA6NDY2 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A18PA6NE21 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A20PA6NIJ5 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A7PA6NKC0 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A22PA8MWA6 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A12PA8MX19 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A5PA8MXJ8 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A23PA8MXZ1 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A26D6RGX4 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 IGHV1-69P01742 117 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A15PP0C7V4 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A13PP0C7W8 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A14PP0C7W9 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A24PP0C7X0 464 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 RNF166Q96A37 237 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-202ENST00000357409 AKAP11Q9UKA4 1901 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-202ENST00000357409 IGKV2-29A2NJV5 120 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-202ENST00000357409 CCL24O00175 119 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 SS18Q15532 418 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 Q6ZR03 302 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 OR2K2Q8NGT1 345 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 RITA1Q96K30 269 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 TCF20Q9UGU0 1960 aaKnown RBP5.91□□□□□ -1.46
VPS13A-202ENST00000357409 IGLV3-12A0A075B6K2 115 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 GLRX5Q86SX6 157 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 TMEM242Q9NWH2 141 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 SCN8AQ9UQD0 1980 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 GGTLC3B5MD39 225 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 MORN5Q5VZ52 161 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 ATP5L2Q7Z4Y8 100 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 IFI27L1Q96BM0 104 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 ERG28Q9UKR5 140 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 INAFM1C9JVW0 142 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 RASL11AQ6T310 242 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 SLC25A2Q9BXI2 301 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 PLXNB2O15031 1838 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 ZNF638Q14966 1978 aaKnown RBP5.91□□□□□ -1.46
VPS13A-202ENST00000357409 DPM2O94777 84 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 TEX43Q6ZNM6 134 aa5.91□□□□□ -1.46
VPS13A-202ENST00000357409 ITGB1BP1O14713 200 aa5.9□□□□□ -1.46
VPS13A-202ENST00000357409 IGFBP3P17936 291 aaPredicted RBP5.9□□□□□ -1.46
VPS13A-202ENST00000357409 LINC00114Q6XXX2 140 aa5.9□□□□□ -1.46
VPS13A-202ENST00000357409 TMEM86BQ8N661 226 aa5.9□□□□□ -1.46
VPS13A-202ENST00000357409 TRGV11A0A075B6L2 103 aa5.9□□□□□ -1.46
VPS13A-202ENST00000357409 A0A1B0GWJ7 208 aa5.9□□□□□ -1.46
VPS13A-202ENST00000357409 LINC00299Q6ZSB3 139 aa5.9□□□□□ -1.46
VPS13A-202ENST00000357409 THAP8Q8NA92 274 aa5.9□□□□□ -1.46
VPS13A-202ENST00000357409 MBD3L1Q8WWY6 194 aa5.9□□□□□ -1.46
VPS13A-202ENST00000357409 SLC25A48Q6ZT89 311 aaKnown RBP5.9□□□□□ -1.46
VPS13A-202ENST00000357409 PSG3Q16557 428 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 CLDN16Q9Y5I7 305 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 A0A1W2PPI3 338 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 SRRM5B3KS81 715 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 GAS1P54826 345 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 COX19Q49B96 90 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 SLC50A1Q9BRV3 221 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 HAMPP81172 84 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 BUB3O43684 328 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 PLA2G2EQ9NZK7 142 aa5.9□□□□□ -1.47
VPS13A-202ENST00000357409 TRAV8-4A0A0B4J246 113 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 NHLRC3Q5JS37 347 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 ZFAND6Q6FIF0 208 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 HEPN1Q6WQI6 88 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 MT-ND6P03923 174 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 LINC00518Q8N0U6 118 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 LYPD3O95274 346 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 SMR3AQ99954 134 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 PAPPA-AS1Q5QFB9 102 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 RREB1Q92766 1687 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 STRCQ7RTU9 1775 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 DEFB113Q30KQ7 82 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 PVRIGQ6DKI7 326 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 U3KQE9 123 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 ZNF646O15015 1829 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-202ENST00000357409 B3GALT5-AS1P59052 145 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 MRPS18CQ9Y3D5 142 aaKnown RBP5.89□□□□□ -1.47
VPS13A-202ENST00000357409 KLF2Q9Y5W3 355 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-202ENST00000357409 ZNF124Q15973 351 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 NUP35Q8NFH5 326 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 CITED1Q99966 193 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 UNC13CQ8NB66 2214 aa5.89□□□□□ -1.47
VPS13A-202ENST00000357409 SPINK8P0C7L1 97 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 KLF5Q13887 457 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-202ENST00000357409 CD200R1LQ6Q8B3 271 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 C22orf46C9J442 243 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 F8W735 103 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-202ENST00000357409 LECT2O14960 151 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 ZNF345Q14585 488 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 Q6P435 159 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 TRPM3Q9HCF6 1732 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-202ENST00000357409 KIAA1551Q9HCM1 1747 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 HLA-DRB4P13762 266 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 CRYGSP22914 178 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 GAGE2BQ13066 116 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 SCRT2Q9NQ03 307 aa5.88□□□□□ -1.47
VPS13A-202ENST00000357409 HLA-DRB4X5D2U9 266 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms