RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 PIP4P1Q86T03 277 aa9.54□□□□□ -0.88
SHMT2-201ENST00000328923 SPENQ96T58 3664 aaKnown RBP9.54□□□□□ -0.88
SHMT2-201ENST00000328923 UBTD1Q9HAC8 227 aa9.54□□□□□ -0.88
SHMT2-201ENST00000328923 DKK2Q9UBU2 259 aa9.54□□□□□ -0.88
SHMT2-201ENST00000328923 TMSB15BA0A087X1C1 80 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 LINC00694P0DN24 101 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 CCL3P10147 92 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 CCL4P13236 92 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 MYOD1P15172 320 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 B3GALT5-AS1P59052 145 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 H2BFWTQ7Z2G1 175 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 OR1L8Q8NGR8 309 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 ZFHX4Q86UP3 3567 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 RPL7P18124 248 aaKnown RBP9.53□□□□□ -0.88
SHMT2-201ENST00000328923 Q6ZQT7 251 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 GGNQ86UU5 652 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 RASL10AQ92737 203 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 RPEQ96AT9 228 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 ZNF414Q96IQ9 312 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 FBXL15Q9H469 300 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 CHD8Q9HCK8 2581 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 KLF13Q9Y2Y9 288 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-201ENST00000328923 CFAP47Q6ZTR5 3102 aa9.53□□□□□ -0.88
SHMT2-201ENST00000328923 C17orf98A8MV24 154 aa9.52□□□□□ -0.88
SHMT2-201ENST00000328923 SNCGO76070 127 aa9.52□□□□□ -0.88
SHMT2-201ENST00000328923 IGHG4P01861 327 aa9.52□□□□□ -0.88
SHMT2-201ENST00000328923 SPINK2P20155 84 aa9.52□□□□□ -0.88
SHMT2-201ENST00000328923 MPV17P39210 176 aa9.52□□□□□ -0.88
SHMT2-201ENST00000328923 TMEM78Q5T7P6 136 aa9.52□□□□□ -0.88
SHMT2-201ENST00000328923 Q6ZS92 163 aa9.52□□□□□ -0.88
SHMT2-201ENST00000328923 C1orf162Q8NEQ5 155 aaPredicted RBP9.52□□□□□ -0.88
SHMT2-201ENST00000328923 PRSS3P2Q8NHM4 247 aa9.52□□□□□ -0.88
SHMT2-201ENST00000328923 LAMA5O15230 3695 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 PRSS46E5RG02 174 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 J3QT63 122 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 BRWD1-AS2P59051 145 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 PCOLCEQ15113 449 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 MRPL23Q16540 153 aaKnown RBP9.52□□□□□ -0.89
SHMT2-201ENST00000328923 TEN1Q86WV5 123 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 Q8IYB0 196 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 RBMXL3Q8N7X1 1067 aaKnown RBP9.52□□□□□ -0.89
SHMT2-201ENST00000328923 DNAJC30Q96LL9 226 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 SGK494Q96LW2 274 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 ZNF488Q96MN9 340 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 TMEM126AQ9H061 195 aa9.52□□□□□ -0.89
SHMT2-201ENST00000328923 SLC25A10Q9UBX3 287 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-201ENST00000328923 CNOT1A5YKK6 2376 aaKnown RBP9.51□□□□□ -0.89
SHMT2-201ENST00000328923 LINC00205P59089 165 aa9.51□□□□□ -0.89
SHMT2-201ENST00000328923 SFTA2Q6UW10 78 aa9.51□□□□□ -0.89
SHMT2-201ENST00000328923 RPS19BP1Q86WX3 136 aaKnown RBP9.51□□□□□ -0.89
SHMT2-201ENST00000328923 C7orf69Q9H7B7 122 aa9.51□□□□□ -0.89
SHMT2-201ENST00000328923 IFI27P40305 119 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-201ENST00000328923 PSMB2P49721 201 aa9.51□□□□□ -0.89
SHMT2-201ENST00000328923 SSR4P51571 173 aa9.51□□□□□ -0.89
SHMT2-201ENST00000328923 WFDC3Q8IUB2 231 aa9.51□□□□□ -0.89
SHMT2-201ENST00000328923 SDK2Q58EX2 2172 aa9.51□□□□□ -0.89
SHMT2-201ENST00000328923 COL27A1Q8IZC6 1860 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-201ENST00000328923 PLA2G2CQ5R387 149 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 FAM53AQ6NSI3 398 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-201ENST00000328923 LINC00322Q6ZN03 302 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-201ENST00000328923 PPP1R27Q86WC6 154 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 RPRMLQ8N4K4 120 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 DLX4Q92988 240 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-201ENST00000328923 LINC01587Q99440 93 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 MAP1BP46821 2468 aaKnown RBP9.5□□□□□ -0.89
SHMT2-201ENST00000328923 KNTC1P50748 2209 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 IGHV1-45A0A0A0MS14 117 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 LOC389332A0A1B0GUA5 103 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 TMEM262E9PQX1 116 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 OR2H2O95918 312 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 MORN3Q6PF18 240 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-201ENST00000328923 SLC25A33Q9BSK2 321 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 TPPP3Q9BW30 176 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 ARRDC1-AS1Q9H2J1 176 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 RPP21Q9H633 154 aaKnown RBP9.5□□□□□ -0.89
SHMT2-201ENST00000328923 ONECUT1Q9UBC0 465 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 FZR1Q9UM11 496 aa9.5□□□□□ -0.89
SHMT2-201ENST00000328923 AMMECR1Q9Y4X0 333 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-201ENST00000328923 CXCL13O43927 109 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 MOSP00540 346 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 FCER1GP30273 86 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 FAM19A5Q7Z5A7 132 aaPredicted RBP9.49□□□□□ -0.89
SHMT2-201ENST00000328923 CELA2AP08217 269 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 ZNF883P0CG24 379 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 COL8A1P27658 744 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 PRR20EP86478 221 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 PRR20CP86479 221 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 PRR20DP86480 221 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 PRR20BP86481 221 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 PRR20AP86496 221 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 OR1C1Q15619 314 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 IMMP1LQ96LU5 166 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 RASL11BQ9BPW5 248 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 NABP2Q9BQ15 211 aa9.49□□□□□ -0.89
SHMT2-201ENST00000328923 COX6A1P12074 109 aa9.48□□□□□ -0.89
SHMT2-201ENST00000328923 MDFICQ9P1T7 246 aa9.48□□□□□ -0.89
SHMT2-201ENST00000328923 KLF12Q9Y4X4 402 aa9.48□□□□□ -0.89
SHMT2-201ENST00000328923 IGKV3D-15A0A087WSY6 115 aa9.48□□□□□ -0.89
SHMT2-201ENST00000328923 RBPMS2Q6ZRY4 209 aaKnown RBP9.48□□□□□ -0.89
SHMT2-201ENST00000328923 IFI27L1Q96BM0 104 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms