RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 METTL15P1P0C7V9 234 aa14.01□□□□□ -0.17
LIME1-201ENST00000309546 LINC00869P0C866 280 aa14.01□□□□□ -0.17
LIME1-201ENST00000309546 RAP2BP61225 183 aa14.01□□□□□ -0.17
LIME1-201ENST00000309546 RNF126Q9BV68 326 aa14.01□□□□□ -0.17
LIME1-201ENST00000309546 GSKIPQ9P0R6 139 aa14.01□□□□□ -0.17
LIME1-201ENST00000309546 HIGD1AQ9Y241 93 aa14.01□□□□□ -0.17
LIME1-201ENST00000309546 GOLT1BQ9Y3E0 138 aa14.01□□□□□ -0.17
LIME1-201ENST00000309546 RFNGQ9Y644 331 aa14.01□□□□□ -0.17
LIME1-201ENST00000309546 TMEM189A5PLL7 270 aa14□□□□□ -0.17
LIME1-201ENST00000309546 SMIM9A6NGZ8 99 aa14□□□□□ -0.17
LIME1-201ENST00000309546 OR5G3P0C626 314 aa14□□□□□ -0.17
LIME1-201ENST00000309546 DLK1P80370 383 aa14□□□□□ -0.17
LIME1-201ENST00000309546 IGFL4Q6B9Z1 124 aa14□□□□□ -0.17
LIME1-201ENST00000309546 ZBTB8BQ8NAP8 495 aaPredicted RBP14□□□□□ -0.17
LIME1-201ENST00000309546 C17orf77Q96MU5 243 aa14□□□□□ -0.17
LIME1-201ENST00000309546 SLC25A39Q9BZJ4 359 aaPredicted RBP14□□□□□ -0.17
LIME1-201ENST00000309546 C20orf85Q9H1P6 137 aa14□□□□□ -0.17
LIME1-201ENST00000309546 MGAT4CQ9UBM8 478 aa14□□□□□ -0.17
LIME1-201ENST00000309546 DNAH10Q8IVF4 4471 aa14□□□□□ -0.17
LIME1-201ENST00000309546 SPART-AS1P0CW21 52 aa13.99□□□□□ -0.17
LIME1-201ENST00000309546 TMEM14EPQ6UXP3 125 aa13.99□□□□□ -0.17
LIME1-201ENST00000309546 RNF182Q8N6D2 247 aa13.99□□□□□ -0.17
LIME1-201ENST00000309546 MITD1Q8WV92 249 aa13.99□□□□□ -0.17
LIME1-201ENST00000309546 UHRF2Q96PU4 802 aa13.99□□□□□ -0.17
LIME1-201ENST00000309546 SHANK2-AS3Q9BTD1 123 aa13.99□□□□□ -0.17
LIME1-201ENST00000309546 HYPMO75409 117 aa13.98□□□□□ -0.17
LIME1-201ENST00000309546 AMBPP02760 352 aa13.98□□□□□ -0.17
LIME1-201ENST00000309546 SLC38A11Q08AI6 406 aa13.98□□□□□ -0.17
LIME1-201ENST00000309546 OR10P1Q8NGE3 313 aa13.98□□□□□ -0.17
LIME1-201ENST00000309546 RCL1Q9Y2P8 373 aaKnown RBP13.98□□□□□ -0.17
LIME1-201ENST00000309546 CCSO14618 274 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 LYRM1O43325 122 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 TSC22D2O75157 780 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 HBE1P02100 147 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 RPL7P18124 248 aaKnown RBP13.97□□□□□ -0.17
LIME1-201ENST00000309546 SELENOTP62341 195 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 FAM222AQ5U5X8 452 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 C1orf158Q8N1D5 194 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 ZNF738Q8NE65 137 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 TMEM208Q9BTX3 173 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 NDUFAF3Q9BU61 184 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 ARL6Q9H0F7 186 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 NPVFQ9HCQ7 196 aa13.97□□□□□ -0.17
LIME1-201ENST00000309546 TRAV8-2A0A0B4J237 113 aa13.96□□□□□ -0.17
LIME1-201ENST00000309546 CNN1P51911 297 aaKnown RBP13.96□□□□□ -0.17
LIME1-201ENST00000309546 CNPY1Q3B7I2 92 aa13.96□□□□□ -0.17
LIME1-201ENST00000309546 TEPPQ6URK8 271 aa13.96□□□□□ -0.17
LIME1-201ENST00000309546 DKK2Q9UBU2 259 aa13.96□□□□□ -0.17
LIME1-201ENST00000309546 TRAV6A0A075B6T7 132 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 LOC102723971A0A1B0GUV8 181 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 FAM25EA8MYX2 175 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 PLA2G10O15496 165 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 DUSP14O95147 198 aaKnown RBP13.95□□□□□ -0.18
LIME1-201ENST00000309546 MBPP02686 304 aaPredicted RBP13.95□□□□□ -0.18
LIME1-201ENST00000309546 TAS2R30P59541 319 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 PLP1P60201 277 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 ZNF846Q147U1 533 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 SPINK13Q1W4C9 94 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 RRN3P1Q2M238 152 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 AMTNQ6UX39 209 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 OR11H7Q8NGC8 314 aa13.95□□□□□ -0.18
LIME1-201ENST00000309546 TEX48A0A1B0GUV7 120 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 C7orf66A4D0T2 115 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 A8MTW9 85 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 FNDC10F2Z333 226 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 L7N2F9 121 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 M0R2Z0 102 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 VAMP2P63027 116 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 S100A7AQ86SG5 101 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 LRRC20Q8TCA0 184 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 IGF2BP2-AS1Q96M15 143 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 NIPSNAP3BQ9BS92 247 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 ARV1Q9H2C2 271 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 PLA2G2EQ9NZK7 142 aa13.94□□□□□ -0.18
LIME1-201ENST00000309546 LSM5Q9Y4Y9 91 aaKnown RBP13.94□□□□□ -0.18
LIME1-201ENST00000309546 YTHDF2Q9Y5A9 579 aaKnown RBP13.94□□□□□ -0.18
LIME1-201ENST00000309546 GOSR2O14653 212 aa13.93□□□□□ -0.18
LIME1-201ENST00000309546 INSP01308 110 aa13.93□□□□□ -0.18
LIME1-201ENST00000309546 TCRBP04435 133 aa13.93□□□□□ -0.18
LIME1-201ENST00000309546 HTN3P15516 51 aa13.93□□□□□ -0.18
LIME1-201ENST00000309546 ARL16Q0P5N6 197 aa13.93□□□□□ -0.18
LIME1-201ENST00000309546 NUDT15Q9NV35 164 aa13.93□□□□□ -0.18
LIME1-201ENST00000309546 K7EPK0 472 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 P0DMU3 169 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 FAM231AP0DMU4 169 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 FAM231CP0DMU5 169 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 PRB4P10163 310 aaPredicted RBP13.92□□□□□ -0.18
LIME1-201ENST00000309546 BCAP31P51572 246 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 HIST1H1AQ02539 215 aaPredicted RBP13.92□□□□□ -0.18
LIME1-201ENST00000309546 PATE2Q6UY27 113 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 ZNF546Q86UE3 836 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 BAP18Q8IXM2 172 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 SEC22CQ9BRL7 303 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 NDUFA13Q9P0J0 144 aa13.92□□□□□ -0.18
LIME1-201ENST00000309546 A0A087X0K7 114 aa13.91□□□□□ -0.18
LIME1-201ENST00000309546 C5orf51A6NDU8 294 aa13.91□□□□□ -0.18
LIME1-201ENST00000309546 AGPAT2O15120 278 aa13.91□□□□□ -0.18
LIME1-201ENST00000309546 CXCL3P19876 107 aa13.91□□□□□ -0.18
LIME1-201ENST00000309546 ZNF431Q8TF32 576 aaPredicted RBP13.91□□□□□ -0.18
LIME1-201ENST00000309546 PPP1R14DQ9NXH3 145 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms