RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SSBP2P81877 361 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-201ENST00000303395 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.37□□□□□ -1.712e-6■■□□□ 12
SCN1A-201ENST00000303395 C3orf56Q8N813 242 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 ZMAT4Q9H898 229 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 GAGE12BA1L429 117 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 IFITM1P13164 125 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 C3AR1Q16581 482 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 SAMD5Q5TGI4 173 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 COQ2Q96H96 371 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 WDR90Q96KV7 1748 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-201ENST00000303395 GATA4P43694 442 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 COLCA1Q6ZS62 124 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 PAQR4Q8N4S7 273 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-201ENST00000303395 GTSF1LQ9H1H1 148 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 FBXL15Q9H469 300 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 PLXNB3Q9ULL4 1909 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 TRGV11A0A075B6L2 103 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 IGKV1D-16P01601 117 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 CD7P09564 240 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 CRYBA4P53673 196 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 WDR82Q6UXN9 313 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 LINC00311Q8N616 119 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 C18orf15Q96N68 181 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 C1QTNF4Q9BXJ3 329 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 UBL5Q9BZL1 73 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 IGLV3-1P01715 115 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 ZFP36L1Q07352 338 aaKnown RBP4.36□□□□□ -1.71
SCN1A-201ENST00000303395 BRK1Q8WUW1 75 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 SSBP3Q9BWW4 388 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-201ENST00000303395 EPDR1Q9UM22 224 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 FABP5P3A8MUU1 101 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 IL9P15248 144 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 C6orf226Q5I0X4 101 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 GFI1Q99684 422 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 TRAV2A0A0B4J234 112 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 RBAKDNA6NC62 111 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 C2CD4DB7Z1M9 353 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 H3BMG7 143 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 DUSP14O95147 198 aaKnown RBP4.36□□□□□ -1.71
SCN1A-201ENST00000303395 ADCYAP1P18509 176 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF488Q96MN9 340 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 C17orf77Q96MU5 243 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 C20orf78Q9BR46 151 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 DKK4Q9UBT3 224 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 METRNQ9UJH8 293 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 ERG28Q9UKR5 140 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 FAM168AQ92567 244 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 SOCS3O14543 225 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 CBLN1P23435 193 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 C9orf139Q6ZV77 190 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 RFNGQ9Y644 331 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 IGHV3OR15-7A0A075B7D8 119 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 ERCC8Q13216 396 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 CARD19Q96LW7 228 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 SMIM2Q9BVW6 85 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 RNF114Q9Y508 228 aa4.36□□□□□ -1.71
SCN1A-201ENST00000303395 ACANP16112 2415 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 Q6ZS52 159 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 ST6GALNAC3Q8NDV1 305 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 THSD7BQ9C0I4 1608 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 SMIM27A0A1W2PRY6 76 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 IGKCP01834 107 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 HGFACQ04756 655 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 ANKRD39Q53RE8 183 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF664Q8N3J9 261 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 RNF152Q8N8N0 203 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 CLEC7AQ9BXN2 247 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 IMUPQ9GZP8 106 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 PRDM6Q9NQX0 595 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 TMEM240Q5SV17 173 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 ATP5EP2Q5VTU8 51 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 ACP7Q6ZNF0 438 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 HIGD1CA8MV81 97 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 ZIC3O60481 467 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 ATP5EP56381 51 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-201ENST00000303395 HCP5Q6MZN7 132 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 RNF138Q8WVD3 245 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 B9A039 149 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 TIMM23O14925 209 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 NDUFB1O75438 58 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 IGFBP2P18065 325 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 CSRP1P21291 193 aaKnown RBP4.35□□□□□ -1.71
SCN1A-201ENST00000303395 DEFB103AP81534 67 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 PEAR1Q5VY43 1037 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-201ENST00000303395 GAGE2AQ6NT46 116 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 TMEM131Q92545 1883 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 KLHDC3Q9BQ90 382 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 WFDC6Q9BQY6 131 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 PIEZO1Q92508 2521 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 TRAV25A0A0B4J276 109 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 SRRM5B3KS81 715 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 TEX22C9J3V5 150 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 PDE6GP18545 87 aa4.35□□□□□ -1.71
SCN1A-201ENST00000303395 DMRTC2Q8IXT2 367 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-201ENST00000303395 HELZP42694 1942 aaKnown RBP4.35□□□□□ -1.71
SCN1A-201ENST00000303395 EFNB3Q15768 340 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 PIGYQ3MUY2 71 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 C9orf153Q5TBE3 101 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 TSPO2Q5TGU0 170 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms