RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SLC25A22Q9H936 323 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 PRR13Q9NZ81 148 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 DUXBA0A1W2PPF3 345 aa10.35□□□□□ -0.75
CCDC88B-201ENST00000301897 M0R2Z0 102 aa10.35□□□□□ -0.75
CCDC88B-201ENST00000301897 CIB3Q96Q77 187 aaPredicted RBP10.35□□□□□ -0.75
CCDC88B-201ENST00000301897 IGKV1OR2-108A0A075B7D4 117 aa10.34□□□□□ -0.75
CCDC88B-201ENST00000301897 ANKRD20A5PA0PJZ0 165 aa10.34□□□□□ -0.75
CCDC88B-201ENST00000301897 CRXO43186 299 aaPredicted RBP10.34□□□□□ -0.75
CCDC88B-201ENST00000301897 MED6O75586 246 aa10.34□□□□□ -0.75
CCDC88B-201ENST00000301897 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.34□□□□□ -0.75
CCDC88B-201ENST00000301897 TMEM147Q9BVK8 224 aa10.34□□□□□ -0.75
CCDC88B-201ENST00000301897 SCRT2Q9NQ03 307 aa10.34□□□□□ -0.75
CCDC88B-201ENST00000301897 LINC00588Q9Y4M8 146 aa10.34□□□□□ -0.75
CCDC88B-201ENST00000301897 TIMM8BQ9Y5J9 83 aaPredicted RBP10.34□□□□□ -0.75
CCDC88B-201ENST00000301897 DMBT1Q9UGM3 2413 aaPredicted RBP10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 BOLA2-SMG1P6H3BVE0 249 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 SLC25A6P12236 298 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 BTF3P20290 206 aaKnown RBP10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 TAS2R60P59551 318 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 ZNF493Q6ZR52 646 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 SSX7Q7RTT5 188 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 SPATA12Q7Z6I5 190 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 S100A7AQ86SG5 101 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 BAP18Q8IXM2 172 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 OR10J6PQ8NGY7 276 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 C16orf74Q96GX8 76 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 PPP1R14DQ9NXH3 145 aa10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 PAIP2BQ9ULR5 123 aaKnown RBP10.33□□□□□ -0.76
CCDC88B-201ENST00000301897 PLAC8L1A1L4L8 177 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 PITX3O75364 302 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 ORM2P19652 201 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 IL18Q14116 193 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 SPCS2Q15005 226 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 ZNF738Q8NE65 137 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 RNF141Q8WVD5 230 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 ZNF503Q96F45 646 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 DIRAS2Q96HU8 199 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 C17orf77Q96MU5 243 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 LINC01587Q99440 93 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 BCL7BQ9BQE9 202 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 Q9H8V8 135 aa10.32□□□□□ -0.76
CCDC88B-201ENST00000301897 APOBP04114 4563 aaKnown RBP10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 A0A1W2PPQ1 181 aa10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 ADAP1O75689 374 aa10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 PRM2P04554 102 aa10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 IAPPP10997 89 aa10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 RPL7P18124 248 aaKnown RBP10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 TMBIM6P55061 237 aa10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 TMEM144Q7Z5S9 345 aa10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 MCUBQ9NWR8 336 aa10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 RNF24Q9Y225 148 aa10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 DNAH5Q8TE73 4624 aa10.31□□□□□ -0.76
CCDC88B-201ENST00000301897 AZU1P20160 251 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 RAP2BP61225 183 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 RHOBP62745 196 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 FGL1Q08830 312 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 FCN2Q15485 313 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 RNF182Q8N6D2 247 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 OR8A1Q8NGG7 326 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 DYNC2LI1Q8TCX1 351 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 RAB2BQ8WUD1 216 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 GNPNAT1Q96EK6 184 aaPredicted RBP10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 SLC25A39Q9BZJ4 359 aaPredicted RBP10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 Q9H3A6 140 aa10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 RSL24D1Q9UHA3 163 aaKnown RBP10.3□□□□□ -0.76
CCDC88B-201ENST00000301897 TRAV12-2A0A075B6T6 113 aa10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 TRAV8-2A0A0B4J237 113 aa10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 PRSS46E5RG02 174 aa10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 H3BRN7 92 aa10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 M6PRP20645 277 aa10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 HIST1H1AQ02539 215 aaPredicted RBP10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 AKR1C1Q04828 323 aa10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 TMEM128Q5BJH2 165 aa10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 TMEM263Q8WUH6 116 aaKnown RBP10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 SHANK2-AS3Q9BTD1 123 aa10.29□□□□□ -0.76
CCDC88B-201ENST00000301897 SYNGR2O43760 224 aa10.28□□□□□ -0.76
CCDC88B-201ENST00000301897 FAUP35544 74 aaKnown RBP10.28□□□□□ -0.76
CCDC88B-201ENST00000301897 IGFL4Q6B9Z1 124 aa10.28□□□□□ -0.76
CCDC88B-201ENST00000301897 LRTM2Q8N967 370 aa10.28□□□□□ -0.76
CCDC88B-201ENST00000301897 LRRC20Q8TCA0 184 aa10.28□□□□□ -0.76
CCDC88B-201ENST00000301897 RXFP4Q8TDU9 374 aa10.28□□□□□ -0.76
CCDC88B-201ENST00000301897 C20orf144Q9BQM9 153 aa10.28□□□□□ -0.76
CCDC88B-201ENST00000301897 UPK3BQ9BT76 320 aa10.28□□□□□ -0.76
CCDC88B-201ENST00000301897 HIGD1AQ9Y241 93 aa10.28□□□□□ -0.76
CCDC88B-201ENST00000301897 A0A087X0K7 114 aa10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 H3BNG1 76 aa10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 H7BYZ3 331 aa10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 HYPMO75409 117 aa10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 HTN1P15515 57 aa10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 GATA2P23769 480 aaPredicted RBP10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 CDKN1BP46527 198 aa10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 SELENOTP62341 195 aa10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 PSG3Q16557 428 aa10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 RNASE8Q8TDE3 154 aaKnown RBP10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 SOSTQ9BQB4 213 aa10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 NOP10Q9NPE3 64 aaKnown RBP10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 CCDC59Q9P031 241 aaKnown RBP10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 STRAPQ9Y3F4 350 aaKnown RBP10.27□□□□□ -0.77
CCDC88B-201ENST00000301897 H3BMQ9 156 aa10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 WRBO00258 174 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms