RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 KLHDC4Q8TBB5 520 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 USP44Q9H0E7 712 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 SNCAIPQ9Y6H5 919 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 A0A1B0GUL6 1792 aa11.94□□□□□ -0.5
VRK3-224ENST00000601849 BTBD19C9JJ37 291 aa11.93□□□□□ -0.5
VRK3-224ENST00000601849 UBTFL1P0CB47 393 aaPredicted RBP11.93□□□□□ -0.5
VRK3-224ENST00000601849 FGFR2P21802 821 aa11.93□□□□□ -0.5
VRK3-224ENST00000601849 LACTBP83111 547 aaPredicted RBP11.93□□□□□ -0.5
VRK3-224ENST00000601849 GRIK5Q16478 980 aa11.93□□□□□ -0.5
VRK3-224ENST00000601849 SSH1Q8WYL5 1049 aa11.93□□□□□ -0.5
VRK3-224ENST00000601849 USP40Q9NVE5 1235 aa11.93□□□□□ -0.5
VRK3-224ENST00000601849 DENND2AQ9ULE3 1009 aa11.93□□□□□ -0.5
VRK3-224ENST00000601849 PTCH2Q9Y6C5 1203 aa11.93□□□□□ -0.5
VRK3-224ENST00000601849 HTTP42858 3142 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 MKI67P46013 3256 aaKnown RBP11.92□□□□□ -0.5
VRK3-224ENST00000601849 SEMA3EO15041 775 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 CIAO1O76071 339 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 FMNL1O95466 1100 aaPredicted RBP11.92□□□□□ -0.5
VRK3-224ENST00000601849 TCP10Q12799 353 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 ATP2B3Q16720 1220 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 HABP4Q5JVS0 413 aaKnown RBP11.92□□□□□ -0.5
VRK3-224ENST00000601849 ANKRD23Q86SG2 305 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 NKX2-3Q8TAU0 364 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 RAET1EQ8TD07 263 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 SMC4Q9NTJ3 1288 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 LAMB1P07942 1786 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 BRCA2P51587 3418 aa11.92□□□□□ -0.5
VRK3-224ENST00000601849 RPAP1Q9BWH6 1393 aaPredicted RBP11.92□□□□□ -0.5
VRK3-224ENST00000601849 PDHXO00330 501 aa11.91□□□□□ -0.5
VRK3-224ENST00000601849 MYCP01106 439 aaPredicted RBP11.91□□□□□ -0.5
VRK3-224ENST00000601849 IL15P40933 162 aaPredicted RBP11.91□□□□□ -0.5
VRK3-224ENST00000601849 PSMC4P43686 418 aa11.91□□□□□ -0.5
VRK3-224ENST00000601849 SPTY2D1Q68D10 685 aaPredicted RBP11.91□□□□□ -0.5
VRK3-224ENST00000601849 FASTKD5Q7L8L6 764 aaKnown RBP11.91□□□□□ -0.5
VRK3-224ENST00000601849 ZSCAN29Q8IWY8 852 aaPredicted RBP11.91□□□□□ -0.5
VRK3-224ENST00000601849 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.91□□□□□ -0.5
VRK3-224ENST00000601849 TRIM47Q96LD4 638 aa11.91□□□□□ -0.5
VRK3-224ENST00000601849 PICK1Q9NRD5 415 aa11.91□□□□□ -0.5
VRK3-224ENST00000601849 ZNF521Q96K83 1311 aa11.9□□□□□ -0.5
VRK3-224ENST00000601849 CXCL11O14625 94 aa11.9□□□□□ -0.5
VRK3-224ENST00000601849 CT47B1P0C2W7 299 aaPredicted RBP11.9□□□□□ -0.5
VRK3-224ENST00000601849 UBXN2AP68543 259 aa11.9□□□□□ -0.5
VRK3-224ENST00000601849 SLFN5Q08AF3 891 aa11.9□□□□□ -0.5
VRK3-224ENST00000601849 CDC42EP5Q6NZY7 148 aa11.9□□□□□ -0.5
VRK3-224ENST00000601849 C17orf99Q6UX52 265 aa11.9□□□□□ -0.5
VRK3-224ENST00000601849 SH3TC2Q8TF17 1288 aa11.9□□□□□ -0.5
VRK3-224ENST00000601849 PARK7Q99497 189 aaKnown RBP11.9□□□□□ -0.5
VRK3-224ENST00000601849 API5Q9BZZ5 524 aaKnown RBP11.9□□□□□ -0.5
VRK3-224ENST00000601849 SIL1Q9H173 461 aa11.9□□□□□ -0.5
VRK3-224ENST00000601849 BIN2Q9UBW5 565 aaPredicted RBP11.9□□□□□ -0.5
VRK3-224ENST00000601849 ZNF112Q9UJU3 913 aa11.9□□□□□ -0.5
VRK3-224ENST00000601849 LRRFIP2Q9Y608 721 aaKnown RBP11.9□□□□□ -0.5
VRK3-224ENST00000601849 SALL1Q9NSC2 1324 aa11.89□□□□□ -0.51
VRK3-224ENST00000601849 ARAP2Q8WZ64 1704 aa11.89□□□□□ -0.51
VRK3-224ENST00000601849 INPP5BP32019 993 aa11.89□□□□□ -0.51
VRK3-224ENST00000601849 RFX5P48382 616 aaPredicted RBP11.89□□□□□ -0.51
VRK3-224ENST00000601849 DZIP1Q86YF9 867 aaKnown RBP11.89□□□□□ -0.51
VRK3-224ENST00000601849 SRRDQ9UH36 339 aa11.89□□□□□ -0.51
VRK3-224ENST00000601849 CPA4Q9UI42 421 aa11.89□□□□□ -0.51
VRK3-224ENST00000601849 KCNH4Q9UQ05 1017 aa11.89□□□□□ -0.51
VRK3-224ENST00000601849 AKAP2Q9Y2D5 859 aa11.89□□□□□ -0.51
VRK3-224ENST00000601849 DAGLAQ9Y4D2 1042 aa11.89□□□□□ -0.51
VRK3-224ENST00000601849 ENTPD3O75355 529 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 CAPN2P17655 700 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 PRDX5P30044 214 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 GRK4P32298 578 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 FCGRTP55899 365 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 DIXDC1Q155Q3 683 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 NOL9Q5SY16 702 aaKnown RBP11.88□□□□□ -0.51
VRK3-224ENST00000601849 ATG9AQ7Z3C6 839 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 DPF3Q92784 378 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 ARHGAP39Q9C0H5 1083 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 ABCF2Q9UG63 623 aa11.88□□□□□ -0.51
VRK3-224ENST00000601849 OTOFQ9HC10 1997 aa11.87□□□□□ -0.51
VRK3-224ENST00000601849 ECM2O94769 699 aaPredicted RBP11.87□□□□□ -0.51
VRK3-224ENST00000601849 GORABQ5T7V8 394 aa11.87□□□□□ -0.51
VRK3-224ENST00000601849 SCYL3Q8IZE3 742 aa11.87□□□□□ -0.51
VRK3-224ENST00000601849 HTATIP2Q9BUP3 242 aa11.87□□□□□ -0.51
VRK3-224ENST00000601849 IDI2Q9BXS1 227 aa11.87□□□□□ -0.51
VRK3-224ENST00000601849 NOB1Q9ULX3 412 aaKnown RBP11.87□□□□□ -0.51
VRK3-224ENST00000601849 ZHX2Q9Y6X8 837 aa11.87□□□□□ -0.51
VRK3-224ENST00000601849 MYPNQ86TC9 1320 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 ZBTB22O15209 634 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 MAP4K4O95819 1239 aaPredicted RBP11.86□□□□□ -0.51
VRK3-224ENST00000601849 LDHCP07864 332 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 GNAI3P08754 354 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 OSBPP22059 807 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 RGS3P49796 1198 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 GSTO1P78417 241 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 CAP1Q01518 475 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 NFIAQ12857 509 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 MVPQ14764 893 aaKnown RBP11.86□□□□□ -0.51
VRK3-224ENST00000601849 CCDC102BQ68D86 513 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 GADL1Q6ZQY3 521 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 ERICH6Q7L0X2 663 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 SLAIN1Q8ND83 568 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 RNF208Q9H0X6 261 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 COPRSQ9NQ92 184 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 FAM198AQ9UFP1 575 aa11.86□□□□□ -0.51
VRK3-224ENST00000601849 RBBP6Q7Z6E9 1792 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms