RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 IREB2P48200 963 aaKnown RBP13.22□□□□□ -0.29
VRK3-214ENST00000598553 TNFAIP1Q13829 316 aa13.22□□□□□ -0.29
VRK3-214ENST00000598553 TBC1D9Q6ZT07 1266 aa13.22□□□□□ -0.29
VRK3-214ENST00000598553 MIGA2Q7L4E1 593 aa13.22□□□□□ -0.29
VRK3-214ENST00000598553 IFNL1Q8IU54 200 aa13.22□□□□□ -0.29
VRK3-214ENST00000598553 ITPRIPQ8IWB1 547 aa13.22□□□□□ -0.29
VRK3-214ENST00000598553 OPTNQ96CV9 577 aa13.22□□□□□ -0.29
VRK3-214ENST00000598553 TLR7Q9NYK1 1049 aaKnown RBP13.22□□□□□ -0.29
VRK3-214ENST00000598553 HMG20BQ9P0W2 317 aa13.22□□□□□ -0.29
VRK3-214ENST00000598553 DENND2AQ9ULE3 1009 aa13.22□□□□□ -0.29
VRK3-214ENST00000598553 SUGT1Q9Y2Z0 365 aa13.22□□□□□ -0.29
VRK3-214ENST00000598553 ATRNL1Q5VV63 1379 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 GAKO14976 1311 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 GPR25O00155 361 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 LDHBP07195 334 aaKnown RBP13.21□□□□□ -0.29
VRK3-214ENST00000598553 INPP5BP32019 993 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 MCAMP43121 646 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 SH3BP5LQ7L8J4 393 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 ANKRD13AQ8IZ07 590 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 SSH3Q8TE77 659 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 ZKSCAN4Q969J2 545 aaPredicted RBP13.21□□□□□ -0.29
VRK3-214ENST00000598553 MS4A4AQ96JQ5 239 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 NEUROD6Q96NK8 337 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 MRIQ9BWK5 157 aa13.21□□□□□ -0.29
VRK3-214ENST00000598553 DDX4Q9NQI0 724 aaKnown RBP13.21□□□□□ -0.29
VRK3-214ENST00000598553 MAST3O60307 1309 aa13.2□□□□□ -0.3
VRK3-214ENST00000598553 ZBTB48P10074 688 aaPredicted RBP13.2□□□□□ -0.3
VRK3-214ENST00000598553 TNNI2P48788 182 aa13.2□□□□□ -0.3
VRK3-214ENST00000598553 ATP8B2P98198 1209 aa13.2□□□□□ -0.3
VRK3-214ENST00000598553 FAM83AQ86UY5 434 aa13.2□□□□□ -0.3
VRK3-214ENST00000598553 BRI3BPQ8WY22 251 aa13.2□□□□□ -0.3
VRK3-214ENST00000598553 OTUD5Q96G74 571 aa13.2□□□□□ -0.3
VRK3-214ENST00000598553 DBNDD2Q9BQY9 259 aa13.2□□□□□ -0.3
VRK3-214ENST00000598553 ABCF2Q9UG63 623 aa13.2□□□□□ -0.3
VRK3-214ENST00000598553 MANSC4A6NHS7 340 aaPredicted RBP13.19□□□□□ -0.3
VRK3-214ENST00000598553 SEMA3EO15041 775 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 ARID4AP29374 1257 aaPredicted RBP13.19□□□□□ -0.3
VRK3-214ENST00000598553 MAP3K9P80192 1104 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 SREBF2Q12772 1141 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 CRHR2Q13324 411 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 TNNI3KQ59H18 835 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 CEP85Q6P2H3 762 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 CTU1Q7Z7A3 348 aaKnown RBP13.19□□□□□ -0.3
VRK3-214ENST00000598553 FTSJ3Q8IY81 847 aaKnown RBP13.19□□□□□ -0.3
VRK3-214ENST00000598553 REM2Q8IYK8 340 aaPredicted RBP13.19□□□□□ -0.3
VRK3-214ENST00000598553 WRNIP1Q96S55 665 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 SNRKQ9NRH2 765 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 USP40Q9NVE5 1235 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 GNL3LQ9NVN8 582 aaKnown RBP13.19□□□□□ -0.3
VRK3-214ENST00000598553 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.19□□□□□ -0.3
VRK3-214ENST00000598553 HDAC5Q9UQL6 1122 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 FPGT-TNNI3KV9GXZ4 949 aa13.19□□□□□ -0.3
VRK3-214ENST00000598553 TESPA1A2RU30 521 aaPredicted RBP13.18□□□□□ -0.3
VRK3-214ENST00000598553 ZBTB22O15209 634 aa13.18□□□□□ -0.3
VRK3-214ENST00000598553 WDHD1O75717 1129 aaPredicted RBP13.18□□□□□ -0.3
VRK3-214ENST00000598553 BTDP43251 543 aa13.18□□□□□ -0.3
VRK3-214ENST00000598553 RGS3P49796 1198 aa13.18□□□□□ -0.3
VRK3-214ENST00000598553 MECOMQ03112 1051 aa13.18□□□□□ -0.3
VRK3-214ENST00000598553 G3BP1Q13283 466 aaKnown RBP eCLIP13.18□□□□□ -0.3
VRK3-214ENST00000598553 FKBP1CQ5VVH2 108 aa13.18□□□□□ -0.3
VRK3-214ENST00000598553 FAM43AQ8N2R8 423 aa13.18□□□□□ -0.3
VRK3-214ENST00000598553 CFHR5Q9BXR6 569 aa13.18□□□□□ -0.3
VRK3-214ENST00000598553 TMOD2Q9NZR1 351 aa13.18□□□□□ -0.3
VRK3-214ENST00000598553 NDUFB9Q9Y6M9 179 aa13.18□□□□□ -0.3
VRK3-214ENST00000598553 MROH7-TTC4A0A0A0MT08 1334 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 PDS5AQ29RF7 1337 aaKnown RBP13.17□□□□□ -0.3
VRK3-214ENST00000598553 DDTLA6NHG4 134 aaPredicted RBP13.17□□□□□ -0.3
VRK3-214ENST00000598553 SPDYE5A6NIY4 337 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 FAM196BA6NMK8 535 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 SURF6O75683 361 aaKnown RBP13.17□□□□□ -0.3
VRK3-214ENST00000598553 SOX10P56693 466 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 RHBDL3P58872 404 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 MVPQ14764 893 aaKnown RBP13.17□□□□□ -0.3
VRK3-214ENST00000598553 C20orf194Q5TEA3 1177 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 ADGRA1Q86SQ6 560 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 SPATA5Q8NB90 893 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 FAM151AQ8WW52 585 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 DBNLQ9UJU6 430 aaKnown RBP13.17□□□□□ -0.3
VRK3-214ENST00000598553 AKAP2Q9Y2D5 859 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 MYH1P12882 1939 aa13.17□□□□□ -0.3
VRK3-214ENST00000598553 MGAMO43451 1857 aa13.16□□□□□ -0.3
VRK3-214ENST00000598553 CCL15-CCL14A0A0B4J2E2 113 aa13.16□□□□□ -0.3
VRK3-214ENST00000598553 IRF6O14896 467 aa13.16□□□□□ -0.3
VRK3-214ENST00000598553 CCL15Q16663 113 aa13.16□□□□□ -0.3
VRK3-214ENST00000598553 CCDC84Q86UT8 332 aaPredicted RBP13.16□□□□□ -0.3
VRK3-214ENST00000598553 DZIP1Q86YF9 867 aaKnown RBP13.16□□□□□ -0.3
VRK3-214ENST00000598553 SIRT2Q8IXJ6 389 aa13.16□□□□□ -0.3
VRK3-214ENST00000598553 NSUN4Q96CB9 384 aaKnown RBP13.16□□□□□ -0.3
VRK3-214ENST00000598553 EAF2Q96CJ1 260 aaPredicted RBP13.16□□□□□ -0.3
VRK3-214ENST00000598553 CCDC8Q9H0W5 538 aaPredicted RBP13.16□□□□□ -0.3
VRK3-214ENST00000598553 HPS5Q9UPZ3 1129 aa13.16□□□□□ -0.3
VRK3-214ENST00000598553 EXOC6BQ9Y2D4 811 aa13.16□□□□□ -0.3
VRK3-214ENST00000598553 COG6Q9Y2V7 657 aa13.16□□□□□ -0.3
VRK3-214ENST00000598553 DDX60LQ5H9U9 1706 aaKnown RBP13.16□□□□□ -0.3
VRK3-214ENST00000598553 UNCXA6NJT0 531 aa13.15□□□□□ -0.3
VRK3-214ENST00000598553 FKTNO75072 461 aa13.15□□□□□ -0.3
VRK3-214ENST00000598553 PICALMQ13492 652 aa13.15□□□□□ -0.3
VRK3-214ENST00000598553 ERICH6Q7L0X2 663 aa13.15□□□□□ -0.3
VRK3-214ENST00000598553 CD99L2Q8TCZ2 262 aa13.15□□□□□ -0.3
VRK3-214ENST00000598553 ZNF341Q9BYN7 854 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms