RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 KLHDC4Q8TBB5 520 aa17.5■□□□□ 0.39
VMP1-209ENST00000588915 FAM151AQ8WW52 585 aa17.5■□□□□ 0.39
VMP1-209ENST00000588915 ZNF341Q9BYN7 854 aa17.5■□□□□ 0.39
VMP1-209ENST00000588915 IRF6O14896 467 aa17.49■□□□□ 0.39
VMP1-209ENST00000588915 PRMT2P55345 433 aa17.49■□□□□ 0.39
VMP1-209ENST00000588915 SLC9C1Q4G0N8 1177 aa17.49■□□□□ 0.39
VMP1-209ENST00000588915 ZKSCAN4Q969J2 545 aaPredicted RBP17.49■□□□□ 0.39
VMP1-209ENST00000588915 HDAC5Q9UQL6 1122 aa17.49■□□□□ 0.39
VMP1-209ENST00000588915 BTBD19C9JJ37 291 aa17.48■□□□□ 0.39
VMP1-209ENST00000588915 SLFN5Q08AF3 891 aa17.48■□□□□ 0.39
VMP1-209ENST00000588915 GNL3LQ9NVN8 582 aaKnown RBP17.48■□□□□ 0.39
VMP1-209ENST00000588915 ZNF112Q9UJU3 913 aa17.48■□□□□ 0.39
VMP1-209ENST00000588915 CENPFP49454 3210 aa17.47■□□□□ 0.39
VMP1-209ENST00000588915 CIAO1O76071 339 aa17.47■□□□□ 0.39
VMP1-209ENST00000588915 EN2P19622 333 aaPredicted RBP17.47■□□□□ 0.39
VMP1-209ENST00000588915 LACTBP83111 547 aaPredicted RBP17.47■□□□□ 0.39
VMP1-209ENST00000588915 ATG9AQ7Z3C6 839 aa17.47■□□□□ 0.39
VMP1-209ENST00000588915 PTCH2Q9Y6C5 1203 aa17.47■□□□□ 0.39
VMP1-209ENST00000588915 SEMA3EO15041 775 aa17.46■□□□□ 0.39
VMP1-209ENST00000588915 CT47B1P0C2W7 299 aaPredicted RBP17.46■□□□□ 0.39
VMP1-209ENST00000588915 ANKRD23Q86SG2 305 aa17.46■□□□□ 0.39
VMP1-209ENST00000588915 CEP126Q9P2H0 1117 aa17.46■□□□□ 0.39
VMP1-209ENST00000588915 MKI67P46013 3256 aaKnown RBP17.46■□□□□ 0.39
VMP1-209ENST00000588915 SALL1Q9NSC2 1324 aa17.46■□□□□ 0.38
VMP1-209ENST00000588915 C17orf99Q6UX52 265 aa17.45■□□□□ 0.38
VMP1-209ENST00000588915 MIGA2Q7L4E1 593 aa17.45■□□□□ 0.38
VMP1-209ENST00000588915 DENND2AQ9ULE3 1009 aa17.45■□□□□ 0.38
VMP1-209ENST00000588915 KCNH4Q9UQ05 1017 aa17.45■□□□□ 0.38
VMP1-209ENST00000588915 DAGLAQ9Y4D2 1042 aa17.45■□□□□ 0.38
VMP1-209ENST00000588915 LDHBP07195 334 aaKnown RBP17.44■□□□□ 0.38
VMP1-209ENST00000588915 UBTFL1P0CB47 393 aaPredicted RBP17.44■□□□□ 0.38
VMP1-209ENST00000588915 ATP2B3Q16720 1220 aa17.44■□□□□ 0.38
VMP1-209ENST00000588915 SLC4A8Q2Y0W8 1093 aa17.44■□□□□ 0.38
VMP1-209ENST00000588915 HABP4Q5JVS0 413 aaKnown RBP17.44■□□□□ 0.38
VMP1-209ENST00000588915 NOL9Q5SY16 702 aaKnown RBP17.44■□□□□ 0.38
VMP1-209ENST00000588915 CDC42EP5Q6NZY7 148 aa17.44■□□□□ 0.38
VMP1-209ENST00000588915 HOXD10P28358 340 aa17.43■□□□□ 0.38
VMP1-209ENST00000588915 INPP5BP32019 993 aa17.43■□□□□ 0.38
VMP1-209ENST00000588915 IL15P40933 162 aaPredicted RBP17.43■□□□□ 0.38
VMP1-209ENST00000588915 ZGPATQ8N5A5 531 aaKnown RBP17.43■□□□□ 0.38
VMP1-209ENST00000588915 SMC4Q9NTJ3 1288 aa17.43■□□□□ 0.38
VMP1-209ENST00000588915 CXCL11O14625 94 aa17.42■□□□□ 0.38
VMP1-209ENST00000588915 PRDX5P30044 214 aa17.42■□□□□ 0.38
VMP1-209ENST00000588915 TCP10Q12799 353 aa17.42■□□□□ 0.38
VMP1-209ENST00000588915 DIXDC1Q155Q3 683 aa17.42■□□□□ 0.38
VMP1-209ENST00000588915 TRMT2AQ8IZ69 625 aaKnown RBP17.42■□□□□ 0.38
VMP1-209ENST00000588915 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.42■□□□□ 0.38
VMP1-209ENST00000588915 USP40Q9NVE5 1235 aa17.42■□□□□ 0.38
VMP1-209ENST00000588915 BRCA2P51587 3418 aa17.41■□□□□ 0.38
VMP1-209ENST00000588915 PDHXO00330 501 aa17.41■□□□□ 0.38
VMP1-209ENST00000588915 ENTPD3O75355 529 aa17.41■□□□□ 0.38
VMP1-209ENST00000588915 NFIAQ12857 509 aa17.41■□□□□ 0.38
VMP1-209ENST00000588915 IDI2Q9BXS1 227 aa17.41■□□□□ 0.38
VMP1-209ENST00000588915 ARHGAP39Q9C0H5 1083 aa17.41■□□□□ 0.38
VMP1-209ENST00000588915 COPRSQ9NQ92 184 aa17.41■□□□□ 0.38
VMP1-209ENST00000588915 FAM198AQ9UFP1 575 aa17.41■□□□□ 0.38
VMP1-209ENST00000588915 MYH13Q9UKX3 1938 aa17.41■□□□□ 0.38
VMP1-209ENST00000588915 MAP3K10Q02779 954 aa17.4■□□□□ 0.38
VMP1-209ENST00000588915 SLF2Q8IX21 1173 aa17.4■□□□□ 0.38
VMP1-209ENST00000588915 API5Q9BZZ5 524 aaKnown RBP17.4■□□□□ 0.38
VMP1-209ENST00000588915 SIL1Q9H173 461 aa17.4■□□□□ 0.38
VMP1-209ENST00000588915 SRRDQ9UH36 339 aa17.4■□□□□ 0.38
VMP1-209ENST00000588915 PDS5AQ29RF7 1337 aaKnown RBP17.4■□□□□ 0.38
VMP1-209ENST00000588915 ADGRA2Q96PE1 1338 aa17.4■□□□□ 0.38
VMP1-209ENST00000588915 PSMC4P43686 418 aa17.39■□□□□ 0.37
VMP1-209ENST00000588915 MOGSQ13724 837 aa17.39■□□□□ 0.37
VMP1-209ENST00000588915 FASTKD5Q7L8L6 764 aaKnown RBP17.39■□□□□ 0.37
VMP1-209ENST00000588915 SH3TC2Q8TF17 1288 aa17.39■□□□□ 0.37
VMP1-209ENST00000588915 FAM163AQ96GL9 167 aaPredicted RBP17.39■□□□□ 0.37
VMP1-209ENST00000588915 PHKA1P46020 1223 aa17.38■□□□□ 0.37
VMP1-209ENST00000588915 NKX2-3Q8TAU0 364 aa17.38■□□□□ 0.37
VMP1-209ENST00000588915 TRIM47Q96LD4 638 aa17.38■□□□□ 0.37
VMP1-209ENST00000588915 PARK7Q99497 189 aaKnown RBP17.38■□□□□ 0.37
VMP1-209ENST00000588915 CPA4Q9UI42 421 aa17.38■□□□□ 0.37
VMP1-209ENST00000588915 NOB1Q9ULX3 412 aaKnown RBP17.38■□□□□ 0.37
VMP1-209ENST00000588915 GAKO14976 1311 aa17.38■□□□□ 0.37
VMP1-209ENST00000588915 AK9Q5TCS8 1911 aa17.37■□□□□ 0.37
VMP1-209ENST00000588915 PHF20L1A8MW92 1017 aa17.37■□□□□ 0.37
VMP1-209ENST00000588915 BCRP11274 1271 aa17.37■□□□□ 0.37
VMP1-209ENST00000588915 SPTY2D1Q68D10 685 aaPredicted RBP17.37■□□□□ 0.37
VMP1-209ENST00000588915 CCDC102BQ68D86 513 aa17.37■□□□□ 0.37
VMP1-209ENST00000588915 GPAT2Q6NUI2 795 aa17.37■□□□□ 0.37
VMP1-209ENST00000588915 CDCA7LQ96GN5 454 aa17.37■□□□□ 0.37
VMP1-209ENST00000588915 AKAP2Q9Y2D5 859 aa17.37■□□□□ 0.37
VMP1-209ENST00000588915 SLC45A1Q9Y2W3 748 aa17.37■□□□□ 0.37
VMP1-209ENST00000588915 LRRFIP2Q9Y608 721 aaKnown RBP17.37■□□□□ 0.37
VMP1-209ENST00000588915 ATRNL1Q5VV63 1379 aa17.37■□□□□ 0.37
VMP1-209ENST00000588915 FMNL1O95466 1100 aaPredicted RBP17.36■□□□□ 0.37
VMP1-209ENST00000588915 CAPN2P17655 700 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 OSBPP22059 807 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 CTGFP29279 349 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 GRK4P32298 578 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 RGS3P49796 1198 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 ZFPM1Q8IX07 1006 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 SCYL3Q8IZE3 742 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 RAET1EQ8TD07 263 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 ARHGAP45Q92619 1136 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 PICK1Q9NRD5 415 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 ZHX2Q9Y6X8 837 aa17.36■□□□□ 0.37
VMP1-209ENST00000588915 A0A0G2JLL6 359 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms