RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CT47B1P0C2W7 299 aaPredicted RBP14.83□□□□□ -0.04
LIG3-209ENST00000586435 PPIL2Q13356 520 aa14.83□□□□□ -0.04
LIG3-209ENST00000586435 ZNF341Q9BYN7 854 aa14.83□□□□□ -0.04
LIG3-209ENST00000586435 SMC4Q9NTJ3 1288 aa14.83□□□□□ -0.04
LIG3-209ENST00000586435 IRF6O14896 467 aa14.82□□□□□ -0.04
LIG3-209ENST00000586435 TLR2O60603 784 aa14.82□□□□□ -0.04
LIG3-209ENST00000586435 UBTFL1P0CB47 393 aaPredicted RBP14.82□□□□□ -0.04
LIG3-209ENST00000586435 PPATQ06203 517 aa14.82□□□□□ -0.04
LIG3-209ENST00000586435 SNAPC2Q13487 334 aa14.82□□□□□ -0.04
LIG3-209ENST00000586435 TRMT2AQ8IZ69 625 aaKnown RBP14.82□□□□□ -0.04
LIG3-209ENST00000586435 FAM151AQ8WW52 585 aa14.82□□□□□ -0.04
LIG3-209ENST00000586435 ZNF333Q96JL9 665 aa14.82□□□□□ -0.04
LIG3-209ENST00000586435 DAGLAQ9Y4D2 1042 aa14.82□□□□□ -0.04
LIG3-209ENST00000586435 SALL1Q9NSC2 1324 aa14.82□□□□□ -0.04
LIG3-209ENST00000586435 SEMA3EO15041 775 aa14.81□□□□□ -0.04
LIG3-209ENST00000586435 ZKSCAN4Q969J2 545 aaPredicted RBP14.81□□□□□ -0.04
LIG3-209ENST00000586435 GCC1Q96CN9 775 aa14.81□□□□□ -0.04
LIG3-209ENST00000586435 HDAC5Q9UQL6 1122 aa14.81□□□□□ -0.04
LIG3-209ENST00000586435 BRCA2P51587 3418 aa14.81□□□□□ -0.04
LIG3-209ENST00000586435 MKI67P46013 3256 aaKnown RBP14.81□□□□□ -0.04
LIG3-209ENST00000586435 BTBD19C9JJ37 291 aa14.8□□□□□ -0.04
LIG3-209ENST00000586435 GNRH1P01148 92 aa14.8□□□□□ -0.04
LIG3-209ENST00000586435 PRDX5P30044 214 aa14.8□□□□□ -0.04
LIG3-209ENST00000586435 ATP2B3Q16720 1220 aa14.8□□□□□ -0.04
LIG3-209ENST00000586435 CDCA7LQ96GN5 454 aa14.8□□□□□ -0.04
LIG3-209ENST00000586435 GNL3LQ9NVN8 582 aaKnown RBP14.8□□□□□ -0.04
LIG3-209ENST00000586435 CEP126Q9P2H0 1117 aa14.8□□□□□ -0.04
LIG3-209ENST00000586435 ZNF112Q9UJU3 913 aa14.8□□□□□ -0.04
LIG3-209ENST00000586435 PTCH2Q9Y6C5 1203 aa14.8□□□□□ -0.04
LIG3-209ENST00000586435 PTPRFP10586 1907 aa14.79□□□□□ -0.04
LIG3-209ENST00000586435 IL15P40933 162 aaPredicted RBP14.79□□□□□ -0.04
LIG3-209ENST00000586435 LACTBP83111 547 aaPredicted RBP14.79□□□□□ -0.04
LIG3-209ENST00000586435 DIXDC1Q155Q3 683 aa14.79□□□□□ -0.04
LIG3-209ENST00000586435 SLC9C1Q4G0N8 1177 aa14.79□□□□□ -0.04
LIG3-209ENST00000586435 NOL9Q5SY16 702 aaKnown RBP14.79□□□□□ -0.04
LIG3-209ENST00000586435 CDC42EP5Q6NZY7 148 aa14.79□□□□□ -0.04
LIG3-209ENST00000586435 NBPF11Q86T75 865 aa14.79□□□□□ -0.04
LIG3-209ENST00000586435 TMEM106CQ9BVX2 250 aa14.79□□□□□ -0.04
LIG3-209ENST00000586435 API5Q9BZZ5 524 aaKnown RBP14.79□□□□□ -0.04
LIG3-209ENST00000586435 DENND2AQ9ULE3 1009 aa14.79□□□□□ -0.04
LIG3-209ENST00000586435 KCNH4Q9UQ05 1017 aa14.79□□□□□ -0.04
LIG3-209ENST00000586435 RFX7Q2KHR2 1363 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 PDS5AQ29RF7 1337 aaKnown RBP14.78□□□□□ -0.04
LIG3-209ENST00000586435 LDHBP07195 334 aaKnown RBP14.78□□□□□ -0.04
LIG3-209ENST00000586435 INPP5BP32019 993 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 PRMT2P55345 433 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 NFIAQ12857 509 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 KIF22Q14807 665 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 MIGA2Q7L4E1 593 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 ANKRD23Q86SG2 305 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 SIL1Q9H173 461 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 COPRSQ9NQ92 184 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 MGAMO43451 1857 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 DOCK1Q14185 1865 aa14.78□□□□□ -0.04
LIG3-209ENST00000586435 ATRNL1Q5VV63 1379 aa14.77□□□□□ -0.04
LIG3-209ENST00000586435 ADGRA2Q96PE1 1338 aa14.77□□□□□ -0.04
LIG3-209ENST00000586435 EN2P19622 333 aaPredicted RBP14.77□□□□□ -0.05
LIG3-209ENST00000586435 PHKA1P46020 1223 aa14.77□□□□□ -0.05
LIG3-209ENST00000586435 ZGPATQ8N5A5 531 aaKnown RBP14.77□□□□□ -0.05
LIG3-209ENST00000586435 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.77□□□□□ -0.05
LIG3-209ENST00000586435 FAM198AQ9UFP1 575 aa14.77□□□□□ -0.05
LIG3-209ENST00000586435 NOB1Q9ULX3 412 aaKnown RBP14.77□□□□□ -0.05
LIG3-209ENST00000586435 LRRFIP2Q9Y608 721 aaKnown RBP14.77□□□□□ -0.05
LIG3-209ENST00000586435 PHIPQ8WWQ0 1821 aa14.76□□□□□ -0.05
LIG3-209ENST00000586435 GAKO14976 1311 aa14.76□□□□□ -0.05
LIG3-209ENST00000586435 TCP10Q12799 353 aa14.76□□□□□ -0.05
LIG3-209ENST00000586435 C17orf99Q6UX52 265 aa14.76□□□□□ -0.05
LIG3-209ENST00000586435 IDI2Q9BXS1 227 aa14.76□□□□□ -0.05
LIG3-209ENST00000586435 ARHGAP39Q9C0H5 1083 aa14.76□□□□□ -0.05
LIG3-209ENST00000586435 ENTPD3O75355 529 aa14.75□□□□□ -0.05
LIG3-209ENST00000586435 MOGSQ13724 837 aa14.75□□□□□ -0.05
LIG3-209ENST00000586435 CCDC102BQ68D86 513 aa14.75□□□□□ -0.05
LIG3-209ENST00000586435 USP40Q9NVE5 1235 aa14.75□□□□□ -0.05
LIG3-209ENST00000586435 PA2G4Q9UQ80 394 aaKnown RBP14.75□□□□□ -0.05
LIG3-209ENST00000586435 PDHXO00330 501 aa14.74□□□□□ -0.05
LIG3-209ENST00000586435 MTX1Q13505 466 aa14.74□□□□□ -0.05
LIG3-209ENST00000586435 ARHGAP45Q92619 1136 aa14.74□□□□□ -0.05
LIG3-209ENST00000586435 FAM163AQ96GL9 167 aaPredicted RBP14.74□□□□□ -0.05
LIG3-209ENST00000586435 MEIS3Q99687 375 aa14.74□□□□□ -0.05
LIG3-209ENST00000586435 CXCL11O14625 94 aa14.73□□□□□ -0.05
LIG3-209ENST00000586435 ADORA1P30542 326 aa14.73□□□□□ -0.05
LIG3-209ENST00000586435 MAP3K10Q02779 954 aa14.73□□□□□ -0.05
LIG3-209ENST00000586435 RASGRF1Q13972 1273 aa14.73□□□□□ -0.05
LIG3-209ENST00000586435 SLC4A8Q2Y0W8 1093 aa14.73□□□□□ -0.05
LIG3-209ENST00000586435 SLF2Q8IX21 1173 aa14.73□□□□□ -0.05
LIG3-209ENST00000586435 PARK7Q99497 189 aaKnown RBP14.73□□□□□ -0.05
LIG3-209ENST00000586435 SRRDQ9UH36 339 aa14.73□□□□□ -0.05
LIG3-209ENST00000586435 CPA4Q9UI42 421 aa14.73□□□□□ -0.05
LIG3-209ENST00000586435 PHF20L1A8MW92 1017 aa14.72□□□□□ -0.05
LIG3-209ENST00000586435 GNAI3P08754 354 aa14.72□□□□□ -0.05
LIG3-209ENST00000586435 HOXD10P28358 340 aa14.72□□□□□ -0.05
LIG3-209ENST00000586435 CTGFP29279 349 aa14.72□□□□□ -0.05
LIG3-209ENST00000586435 RGS3P49796 1198 aa14.72□□□□□ -0.05
LIG3-209ENST00000586435 RARSP54136 660 aaKnown RBP14.72□□□□□ -0.05
LIG3-209ENST00000586435 HABP4Q5JVS0 413 aaKnown RBP14.72□□□□□ -0.05
LIG3-209ENST00000586435 DZIP1Q86YF9 867 aaKnown RBP14.72□□□□□ -0.05
LIG3-209ENST00000586435 ZFPM1Q8IX07 1006 aa14.72□□□□□ -0.05
LIG3-209ENST00000586435 SCYL3Q8IZE3 742 aa14.72□□□□□ -0.05
LIG3-209ENST00000586435 SH3TC2Q8TF17 1288 aa14.72□□□□□ -0.05
LIG3-209ENST00000586435 AKAP2Q9Y2D5 859 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms