RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 MECOMQ03112 1051 aa23.83■■□□□ 1.41
SS18-209ENST00000578595 NBPF12Q5TAG4 269 aaPredicted RBP23.83■■□□□ 1.41
SS18-209ENST00000578595 TMEM39BQ9GZU3 492 aa23.83■■□□□ 1.41
SS18-209ENST00000578595 PPP1R12BO60237 982 aaPredicted RBP23.82■■□□□ 1.4
SS18-209ENST00000578595 ZAP70P43403 619 aa23.82■■□□□ 1.4
SS18-209ENST00000578595 GSTO1P78417 241 aa23.82■■□□□ 1.4
SS18-209ENST00000578595 LRRCC1Q9C099 1032 aa23.82■■□□□ 1.4
SS18-209ENST00000578595 USP40Q9NVE5 1235 aa23.82■■□□□ 1.4
SS18-209ENST00000578595 SSC5DA1L4H1 1573 aa23.82■■□□□ 1.4
SS18-209ENST00000578595 BTDP43251 543 aa23.81■■□□□ 1.4
SS18-209ENST00000578595 CDC42EP5Q6NZY7 148 aa23.81■■□□□ 1.4
SS18-209ENST00000578595 NOL10Q9BSC4 688 aaKnown RBP23.81■■□□□ 1.4
SS18-209ENST00000578595 BEGAINQ9BUH8 593 aa23.81■■□□□ 1.4
SS18-209ENST00000578595 MROH7-TTC4A0A0A0MT08 1334 aa23.81■■□□□ 1.4
SS18-209ENST00000578595 SMARCA5O60264 1052 aaPredicted RBP23.8■■□□□ 1.4
SS18-209ENST00000578595 LDHCP07864 332 aa23.8■■□□□ 1.4
SS18-209ENST00000578595 NOGQ13253 232 aa23.8■■□□□ 1.4
SS18-209ENST00000578595 CCDC102AQ96A19 550 aa23.8■■□□□ 1.4
SS18-209ENST00000578595 MYH7P12883 1935 aa23.79■■□□□ 1.4
SS18-209ENST00000578595 MAP2K1Q02750 393 aaPredicted RBP23.79■■□□□ 1.4
SS18-209ENST00000578595 TCP10Q12799 353 aa23.79■■□□□ 1.4
SS18-209ENST00000578595 CDAN1Q8IWY9 1227 aa23.79■■□□□ 1.4
SS18-209ENST00000578595 ZNF512BQ96KM6 892 aaPredicted RBP23.79■■□□□ 1.4
SS18-209ENST00000578595 SUPT16HQ9Y5B9 1047 aaKnown RBP23.79■■□□□ 1.4
SS18-209ENST00000578595 PCDHB15Q9Y5E8 787 aa23.79■■□□□ 1.4
SS18-209ENST00000578595 NDUFB9Q9Y6M9 179 aa23.79■■□□□ 1.4
SS18-209ENST00000578595 CDK5RAP2Q96SN8 1893 aa23.79■■□□□ 1.4
SS18-209ENST00000578595 CYP2E1P05181 493 aaPredicted RBP23.78■■□□□ 1.4
SS18-209ENST00000578595 IREB2P48200 963 aaKnown RBP23.78■■□□□ 1.4
SS18-209ENST00000578595 NAA16Q6N069 864 aaPredicted RBP23.78■■□□□ 1.4
SS18-209ENST00000578595 GAKO14976 1311 aa23.78■■□□□ 1.4
SS18-209ENST00000578595 PCNTO95613 3336 aa23.77■■□□□ 1.4
SS18-209ENST00000578595 IDH1O75874 414 aaKnown RBP23.77■■□□□ 1.4
SS18-209ENST00000578595 SLC10A3P09131 477 aa23.77■■□□□ 1.4
SS18-209ENST00000578595 MAP2K2P36507 400 aa23.77■■□□□ 1.4
SS18-209ENST00000578595 MKRN3Q13064 507 aaKnown RBP23.77■■□□□ 1.4
SS18-209ENST00000578595 PICALMQ13492 652 aa23.77■■□□□ 1.4
SS18-209ENST00000578595 FAM83AQ86UY5 434 aa23.77■■□□□ 1.4
SS18-209ENST00000578595 RASAL3Q86YV0 1011 aa23.77■■□□□ 1.4
SS18-209ENST00000578595 NSUN4Q96CB9 384 aaKnown RBP23.77■■□□□ 1.4
SS18-209ENST00000578595 DNAJC2Q99543 621 aaKnown RBP23.77■■□□□ 1.4
SS18-209ENST00000578595 NFIAQ12857 509 aa23.76■■□□□ 1.39
SS18-209ENST00000578595 FKBP1CQ5VVH2 108 aa23.76■■□□□ 1.39
SS18-209ENST00000578595 HOOK2Q96ED9 719 aa23.75■■□□□ 1.39
SS18-209ENST00000578595 TEPSINQ96N21 525 aa23.75■■□□□ 1.39
SS18-209ENST00000578595 PIH1D3Q9NQM4 214 aaKnown RBP23.75■■□□□ 1.39
SS18-209ENST00000578595 ZBTB47Q9UFB7 747 aaPredicted RBP23.75■■□□□ 1.39
SS18-209ENST00000578595 RPAP1Q9BWH6 1393 aaPredicted RBP23.75■■□□□ 1.39
SS18-209ENST00000578595 FOCADQ5VW36 1801 aa23.75■■□□□ 1.39
SS18-209ENST00000578595 RGS3P49796 1198 aa23.74■■□□□ 1.39
SS18-209ENST00000578595 ZSCAN29Q8IWY8 852 aaPredicted RBP23.74■■□□□ 1.39
SS18-209ENST00000578595 FAM151AQ8WW52 585 aa23.74■■□□□ 1.39
SS18-209ENST00000578595 ZIC5Q96T25 663 aa23.74■■□□□ 1.39
SS18-209ENST00000578595 DCTPP1Q9H773 170 aa23.74■■□□□ 1.39
SS18-209ENST00000578595 FAM155AB1AL88 458 aaPredicted RBP23.73■■□□□ 1.39
SS18-209ENST00000578595 KIF23Q02241 960 aaPredicted RBP23.73■■□□□ 1.39
SS18-209ENST00000578595 ZNF384Q8TF68 577 aa23.73■■□□□ 1.39
SS18-209ENST00000578595 SLC10A4Q96EP9 437 aa23.73■■□□□ 1.39
SS18-209ENST00000578595 FAM163AQ96GL9 167 aaPredicted RBP23.73■■□□□ 1.39
SS18-209ENST00000578595 WBP1LQ9NX94 342 aa23.73■■□□□ 1.39
SS18-209ENST00000578595 GPR75-ASB3A0A0A6YYF3 556 aa23.72■■□□□ 1.39
SS18-209ENST00000578595 FOXN1O15353 648 aa23.72■■□□□ 1.39
SS18-209ENST00000578595 DCAF15Q66K64 600 aa23.72■■□□□ 1.39
SS18-209ENST00000578595 CLMNQ96JQ2 1002 aa23.72■■□□□ 1.39
SS18-209ENST00000578595 ANTXR1Q9H6X2 564 aa23.72■■□□□ 1.39
SS18-209ENST00000578595 AATFQ9NY61 560 aaKnown RBP eCLIP23.72■■□□□ 1.39
SS18-209ENST00000578595 FAM198AQ9UFP1 575 aa23.72■■□□□ 1.39
SS18-209ENST00000578595 MYH1P12882 1939 aa23.72■■□□□ 1.39
SS18-209ENST00000578595 GOLIM4O00461 696 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 USP2O75604 605 aaPredicted RBP23.71■■□□□ 1.39
SS18-209ENST00000578595 BAG3O95817 575 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 CYP7A1P22680 504 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 MAP3K12Q12852 859 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 TTF1Q15361 905 aaPredicted RBP23.71■■□□□ 1.39
SS18-209ENST00000578595 TEX11Q8IYF3 940 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 ANKRD13AQ8IZ07 590 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 MAGEB6Q8N7X4 407 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 EXOC6Q8TAG9 804 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 GPATCH3Q96I76 525 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 BOLA2Q9H3K6 86 aa23.71■■□□□ 1.39
SS18-209ENST00000578595 IRX6P78412 446 aaPredicted RBP23.7■■□□□ 1.38
SS18-209ENST00000578595 MAP3K11Q16584 847 aa23.7■■□□□ 1.38
SS18-209ENST00000578595 LDLRAD1Q5T700 205 aa23.7■■□□□ 1.38
SS18-209ENST00000578595 MIGA2Q7L4E1 593 aa23.7■■□□□ 1.38
SS18-209ENST00000578595 ELP3Q9H9T3 547 aa23.7■■□□□ 1.38
SS18-209ENST00000578595 CSADQ9Y600 493 aa23.7■■□□□ 1.38
SS18-209ENST00000578595 ENTPD3O75355 529 aa23.69■■□□□ 1.38
SS18-209ENST00000578595 WRNIP1Q96S55 665 aa23.69■■□□□ 1.38
SS18-209ENST00000578595 CSRNP1Q96S65 589 aa23.69■■□□□ 1.38
SS18-209ENST00000578595 IDI2Q9BXS1 227 aa23.69■■□□□ 1.38
SS18-209ENST00000578595 TSKSQ9UJT2 592 aa23.69■■□□□ 1.38
SS18-209ENST00000578595 RFX7Q2KHR2 1363 aa23.68■■□□□ 1.38
SS18-209ENST00000578595 WDHD1O75717 1129 aaPredicted RBP23.68■■□□□ 1.38
SS18-209ENST00000578595 CTCFP49711 727 aaPredicted RBP23.68■■□□□ 1.38
SS18-209ENST00000578595 ZFPM1Q8IX07 1006 aa23.68■■□□□ 1.38
SS18-209ENST00000578595 SH3RF3Q8TEJ3 882 aaPredicted RBP23.68■■□□□ 1.38
SS18-209ENST00000578595 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.68■■□□□ 1.38
SS18-209ENST00000578595 NAV1Q8NEY1 1877 aa23.67■■□□□ 1.38
SS18-209ENST00000578595 PLCG2P16885 1265 aa23.67■■□□□ 1.38
SS18-209ENST00000578595 ATP5JP18859 108 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms