RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CT47B1P0C2W7 299 aaPredicted RBP26.29■■□□□ 1.8
VPS53-216ENST00000574029 SNAPC2Q13487 334 aa26.29■■□□□ 1.8
VPS53-216ENST00000574029 ATP2B3Q16720 1220 aa26.29■■□□□ 1.8
VPS53-216ENST00000574029 ZNF341Q9BYN7 854 aa26.29■■□□□ 1.8
VPS53-216ENST00000574029 SIL1Q9H173 461 aa26.29■■□□□ 1.8
VPS53-216ENST00000574029 DAGLAQ9Y4D2 1042 aa26.29■■□□□ 1.8
VPS53-216ENST00000574029 BTBD19C9JJ37 291 aa26.28■■□□□ 1.8
VPS53-216ENST00000574029 CDC42EP5Q6NZY7 148 aa26.28■■□□□ 1.8
VPS53-216ENST00000574029 MIGA2Q7L4E1 593 aa26.28■■□□□ 1.8
VPS53-216ENST00000574029 CEP126Q9P2H0 1117 aa26.28■■□□□ 1.8
VPS53-216ENST00000574029 NOB1Q9ULX3 412 aaKnown RBP26.28■■□□□ 1.8
VPS53-216ENST00000574029 TLR2O60603 784 aa26.27■■□□□ 1.8
VPS53-216ENST00000574029 WDHD1O75717 1129 aaPredicted RBP26.27■■□□□ 1.8
VPS53-216ENST00000574029 PRDX5P30044 214 aa26.27■■□□□ 1.8
VPS53-216ENST00000574029 PPATQ06203 517 aa26.27■■□□□ 1.8
VPS53-216ENST00000574029 DIXDC1Q155Q3 683 aa26.27■■□□□ 1.8
VPS53-216ENST00000574029 GNL3LQ9NVN8 582 aaKnown RBP26.27■■□□□ 1.8
VPS53-216ENST00000574029 SALL1Q9NSC2 1324 aa26.27■■□□□ 1.8
VPS53-216ENST00000574029 ZBTB22O15209 634 aa26.26■■□□□ 1.79
VPS53-216ENST00000574029 INPP5BP32019 993 aa26.26■■□□□ 1.79
VPS53-216ENST00000574029 ZNF112Q9UJU3 913 aa26.26■■□□□ 1.79
VPS53-216ENST00000574029 SEMA3EO15041 775 aa26.25■■□□□ 1.79
VPS53-216ENST00000574029 IL15P40933 162 aaPredicted RBP26.25■■□□□ 1.79
VPS53-216ENST00000574029 ZNF333Q96JL9 665 aa26.25■■□□□ 1.79
VPS53-216ENST00000574029 API5Q9BZZ5 524 aaKnown RBP26.25■■□□□ 1.79
VPS53-216ENST00000574029 HDAC5Q9UQL6 1122 aa26.25■■□□□ 1.79
VPS53-216ENST00000574029 LRRFIP2Q9Y608 721 aaKnown RBP26.25■■□□□ 1.79
VPS53-216ENST00000574029 PTCH2Q9Y6C5 1203 aa26.25■■□□□ 1.79
VPS53-216ENST00000574029 ZSWIM8A7E2V4 1837 aa26.25■■□□□ 1.79
VPS53-216ENST00000574029 LDHBP07195 334 aaKnown RBP26.24■■□□□ 1.79
VPS53-216ENST00000574029 TCP10Q12799 353 aa26.24■■□□□ 1.79
VPS53-216ENST00000574029 NFIAQ12857 509 aa26.24■■□□□ 1.79
VPS53-216ENST00000574029 DENND2AQ9ULE3 1009 aa26.24■■□□□ 1.79
VPS53-216ENST00000574029 AK9Q5TCS8 1911 aa26.24■■□□□ 1.79
VPS53-216ENST00000574029 EN2P19622 333 aaPredicted RBP26.23■■□□□ 1.79
VPS53-216ENST00000574029 PHKA1P46020 1223 aa26.23■■□□□ 1.79
VPS53-216ENST00000574029 COPRSQ9NQ92 184 aa26.23■■□□□ 1.79
VPS53-216ENST00000574029 FAM198AQ9UFP1 575 aa26.23■■□□□ 1.79
VPS53-216ENST00000574029 LACTBP83111 547 aaPredicted RBP26.22■■□□□ 1.79
VPS53-216ENST00000574029 SLC9C1Q4G0N8 1177 aa26.22■■□□□ 1.79
VPS53-216ENST00000574029 NBPF11Q86T75 865 aa26.22■■□□□ 1.79
VPS53-216ENST00000574029 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.22■■□□□ 1.79
VPS53-216ENST00000574029 USP40Q9NVE5 1235 aa26.22■■□□□ 1.79
VPS53-216ENST00000574029 PA2G4Q9UQ80 394 aaKnown RBP26.22■■□□□ 1.79
VPS53-216ENST00000574029 ANKRD23Q86SG2 305 aa26.21■■□□□ 1.79
VPS53-216ENST00000574029 TMEM106CQ9BVX2 250 aa26.21■■□□□ 1.79
VPS53-216ENST00000574029 ARHGAP39Q9C0H5 1083 aa26.21■■□□□ 1.79
VPS53-216ENST00000574029 KCNH4Q9UQ05 1017 aa26.21■■□□□ 1.79
VPS53-216ENST00000574029 CENPFP49454 3210 aa26.21■■□□□ 1.79
VPS53-216ENST00000574029 MYH2Q9UKX2 1941 aa26.2■■□□□ 1.79
VPS53-216ENST00000574029 KIF22Q14807 665 aa26.2■■□□□ 1.78
VPS53-216ENST00000574029 NOL9Q5SY16 702 aaKnown RBP26.2■■□□□ 1.78
VPS53-216ENST00000574029 C17orf99Q6UX52 265 aa26.2■■□□□ 1.78
VPS53-216ENST00000574029 MEIS3Q99687 375 aa26.2■■□□□ 1.78
VPS53-216ENST00000574029 DOCK2Q92608 1830 aa26.19■■□□□ 1.78
VPS53-216ENST00000574029 GNRH1P01148 92 aa26.19■■□□□ 1.78
VPS53-216ENST00000574029 ADORA1P30542 326 aa26.19■■□□□ 1.78
VPS53-216ENST00000574029 CCDC102BQ68D86 513 aa26.19■■□□□ 1.78
VPS53-216ENST00000574029 ZFPM1Q8IX07 1006 aa26.19■■□□□ 1.78
VPS53-216ENST00000574029 ZGPATQ8N5A5 531 aaKnown RBP26.19■■□□□ 1.78
VPS53-216ENST00000574029 GCC1Q96CN9 775 aa26.19■■□□□ 1.78
VPS53-216ENST00000574029 KIAA0100Q14667 2235 aaKnown RBP26.18■■□□□ 1.78
VPS53-216ENST00000574029 GAKO14976 1311 aa26.17■■□□□ 1.78
VPS53-216ENST00000574029 PDS5AQ29RF7 1337 aaKnown RBP26.17■■□□□ 1.78
VPS53-216ENST00000574029 RARSP54136 660 aaKnown RBP26.17■■□□□ 1.78
VPS53-216ENST00000574029 PRMT2P55345 433 aa26.17■■□□□ 1.78
VPS53-216ENST00000574029 MOGSQ13724 837 aa26.17■■□□□ 1.78
VPS53-216ENST00000574029 IDI2Q9BXS1 227 aa26.17■■□□□ 1.78
VPS53-216ENST00000574029 ATRNL1Q5VV63 1379 aa26.17■■□□□ 1.78
VPS53-216ENST00000574029 ADGRA2Q96PE1 1338 aa26.16■■□□□ 1.78
VPS53-216ENST00000574029 PDHXO00330 501 aa26.16■■□□□ 1.78
VPS53-216ENST00000574029 ENTPD3O75355 529 aa26.16■■□□□ 1.78
VPS53-216ENST00000574029 ARHGAP45Q92619 1136 aa26.16■■□□□ 1.78
VPS53-216ENST00000574029 RFX7Q2KHR2 1363 aa26.16■■□□□ 1.78
VPS53-216ENST00000574029 TIMM10P62072 90 aa26.15■■□□□ 1.78
VPS53-216ENST00000574029 RASGRF1Q13972 1273 aa26.15■■□□□ 1.78
VPS53-216ENST00000574029 CPA4Q9UI42 421 aa26.15■■□□□ 1.78
VPS53-216ENST00000574029 PHF20L1A8MW92 1017 aa26.14■■□□□ 1.78
VPS53-216ENST00000574029 CTGFP29279 349 aa26.14■■□□□ 1.78
VPS53-216ENST00000574029 RGS3P49796 1198 aa26.14■■□□□ 1.78
VPS53-216ENST00000574029 SH3TC2Q8TF17 1288 aa26.14■■□□□ 1.78
VPS53-216ENST00000574029 FAM163AQ96GL9 167 aaPredicted RBP26.14■■□□□ 1.78
VPS53-216ENST00000574029 MKI67P46013 3256 aaKnown RBP26.14■■□□□ 1.77
VPS53-216ENST00000574029 BRCA2P51587 3418 aa26.13■■□□□ 1.77
VPS53-216ENST00000574029 CXCL11O14625 94 aa26.13■■□□□ 1.77
VPS53-216ENST00000574029 GNAI3P08754 354 aa26.13■■□□□ 1.77
VPS53-216ENST00000574029 MTX1Q13505 466 aa26.13■■□□□ 1.77
VPS53-216ENST00000574029 SLC4A8Q2Y0W8 1093 aa26.13■■□□□ 1.77
VPS53-216ENST00000574029 A0A1B0GUL7 405 aa26.12■■□□□ 1.77
VPS53-216ENST00000574029 SRGAP3O43295 1099 aa26.12■■□□□ 1.77
VPS53-216ENST00000574029 MAP3K10Q02779 954 aa26.12■■□□□ 1.77
VPS53-216ENST00000574029 GPAT2Q6NUI2 795 aa26.12■■□□□ 1.77
VPS53-216ENST00000574029 SH3BP5LQ7L8J4 393 aa26.12■■□□□ 1.77
VPS53-216ENST00000574029 DZIP1Q86YF9 867 aaKnown RBP26.12■■□□□ 1.77
VPS53-216ENST00000574029 SLF2Q8IX21 1173 aa26.12■■□□□ 1.77
VPS53-216ENST00000574029 XAGE2Q96GT9 111 aa26.12■■□□□ 1.77
VPS53-216ENST00000574029 ABCF2Q9UG63 623 aa26.12■■□□□ 1.77
VPS53-216ENST00000574029 AKAP2Q9Y2D5 859 aa26.12■■□□□ 1.77
VPS53-216ENST00000574029 PSMC4P43686 418 aa26.11■■□□□ 1.77
VPS53-216ENST00000574029 TFCP2Q12800 502 aa26.11■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms