RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SIRT2Q8IXJ6 389 aa16.4■□□□□ 0.22
CLK3-213ENST00000563842 EAF2Q96CJ1 260 aaPredicted RBP16.4■□□□□ 0.22
CLK3-213ENST00000563842 FAM163AQ96GL9 167 aaPredicted RBP16.4■□□□□ 0.22
CLK3-213ENST00000563842 CCDC8Q9H0W5 538 aaPredicted RBP16.4■□□□□ 0.22
CLK3-213ENST00000563842 IREB2P48200 963 aaKnown RBP16.39■□□□□ 0.21
CLK3-213ENST00000563842 PRKG1Q13976 671 aa16.39■□□□□ 0.21
CLK3-213ENST00000563842 MAP3K11Q16584 847 aa16.39■□□□□ 0.21
CLK3-213ENST00000563842 NBPF12Q5TAG4 269 aaPredicted RBP16.39■□□□□ 0.21
CLK3-213ENST00000563842 MOB2Q70IA6 237 aa16.39■□□□□ 0.21
CLK3-213ENST00000563842 AACSQ86V21 672 aa16.39■□□□□ 0.21
CLK3-213ENST00000563842 LRP2BPQ9P2M1 347 aa16.39■□□□□ 0.21
CLK3-213ENST00000563842 DBNLQ9UJU6 430 aaKnown RBP16.39■□□□□ 0.21
CLK3-213ENST00000563842 GAKO14976 1311 aa16.39■□□□□ 0.21
CLK3-213ENST00000563842 FAM155AB1AL88 458 aaPredicted RBP16.38■□□□□ 0.21
CLK3-213ENST00000563842 CA12O43570 354 aa16.38■□□□□ 0.21
CLK3-213ENST00000563842 CTCFP49711 727 aaPredicted RBP16.38■□□□□ 0.21
CLK3-213ENST00000563842 USP40Q9NVE5 1235 aa16.38■□□□□ 0.21
CLK3-213ENST00000563842 RAI14Q9P0K7 980 aa16.38■□□□□ 0.21
CLK3-213ENST00000563842 MAST2Q6P0Q8 1798 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 APBB1O00213 710 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 MAP4K4O95819 1239 aaPredicted RBP16.37■□□□□ 0.21
CLK3-213ENST00000563842 IFIT2P09913 472 aaKnown RBP16.37■□□□□ 0.21
CLK3-213ENST00000563842 CACNB3P54284 484 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 MECOMQ03112 1051 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 LDLRAD1Q5T700 205 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 CDC42EP5Q6NZY7 148 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 PI16Q6UXB8 463 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 RASAL3Q86YV0 1011 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 FAM151AQ8WW52 585 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 TEPSINQ96N21 525 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 NOL10Q9BSC4 688 aaKnown RBP16.37■□□□□ 0.21
CLK3-213ENST00000563842 TMEM39BQ9GZU3 492 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 IL1RAPL2Q9NP60 686 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 MROH7-TTC4A0A0A0MT08 1334 aa16.37■□□□□ 0.21
CLK3-213ENST00000563842 RPAP1Q9BWH6 1393 aaPredicted RBP16.37■□□□□ 0.21
CLK3-213ENST00000563842 SSC5DA1L4H1 1573 aa16.36■□□□□ 0.21
CLK3-213ENST00000563842 FOXN1O15353 648 aa16.36■□□□□ 0.21
CLK3-213ENST00000563842 KIF23Q02241 960 aaPredicted RBP16.36■□□□□ 0.21
CLK3-213ENST00000563842 TBC1D9Q6ZT07 1266 aa16.36■□□□□ 0.21
CLK3-213ENST00000563842 ANKRD13AQ8IZ07 590 aa16.36■□□□□ 0.21
CLK3-213ENST00000563842 NSUN4Q96CB9 384 aaKnown RBP16.36■□□□□ 0.21
CLK3-213ENST00000563842 SLC10A4Q96EP9 437 aa16.36■□□□□ 0.21
CLK3-213ENST00000563842 SNRKQ9NRH2 765 aa16.36■□□□□ 0.21
CLK3-213ENST00000563842 USP2O75604 605 aaPredicted RBP16.35■□□□□ 0.21
CLK3-213ENST00000563842 BTDP43251 543 aa16.35■□□□□ 0.21
CLK3-213ENST00000563842 DCAF15Q66K64 600 aa16.35■□□□□ 0.21
CLK3-213ENST00000563842 TMED8Q6PL24 325 aaPredicted RBP16.35■□□□□ 0.21
CLK3-213ENST00000563842 LRRCC1Q9C099 1032 aa16.35■□□□□ 0.21
CLK3-213ENST00000563842 TLR7Q9NYK1 1049 aaKnown RBP16.35■□□□□ 0.21
CLK3-213ENST00000563842 OTOFQ9HC10 1997 aa16.35■□□□□ 0.21
CLK3-213ENST00000563842 GPR75-ASB3A0A0A6YYF3 556 aa16.34■□□□□ 0.21
CLK3-213ENST00000563842 ENTPD3O75355 529 aa16.34■□□□□ 0.21
CLK3-213ENST00000563842 CYP2E1P05181 493 aaPredicted RBP16.34■□□□□ 0.21
CLK3-213ENST00000563842 ZAP70P43403 619 aa16.34■□□□□ 0.21
CLK3-213ENST00000563842 AAMPQ13685 434 aa16.34■□□□□ 0.21
CLK3-213ENST00000563842 NAA16Q6N069 864 aaPredicted RBP16.34■□□□□ 0.21
CLK3-213ENST00000563842 IDI2Q9BXS1 227 aa16.34■□□□□ 0.21
CLK3-213ENST00000563842 PRDM10Q9NQV6 1147 aa16.34■□□□□ 0.21
CLK3-213ENST00000563842 DOCK2Q92608 1830 aa16.33■□□□□ 0.21
CLK3-213ENST00000563842 BAG3O95817 575 aa16.33■□□□□ 0.2
CLK3-213ENST00000563842 PLCG2P16885 1265 aa16.33■□□□□ 0.2
CLK3-213ENST00000563842 TCP10Q12799 353 aa16.33■□□□□ 0.2
CLK3-213ENST00000563842 TTF1Q15361 905 aaPredicted RBP16.33■□□□□ 0.2
CLK3-213ENST00000563842 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.33■□□□□ 0.2
CLK3-213ENST00000563842 DCTPP1Q9H773 170 aa16.33■□□□□ 0.2
CLK3-213ENST00000563842 LAMB1P07942 1786 aa16.33■□□□□ 0.2
CLK3-213ENST00000563842 ZBTB48P10074 688 aaPredicted RBP16.32■□□□□ 0.2
CLK3-213ENST00000563842 MAP3K9P80192 1104 aa16.32■□□□□ 0.2
CLK3-213ENST00000563842 SREBF2Q12772 1141 aa16.32■□□□□ 0.2
CLK3-213ENST00000563842 CSRNP1Q96S65 589 aa16.32■□□□□ 0.2
CLK3-213ENST00000563842 ZIC5Q96T25 663 aa16.32■□□□□ 0.2
CLK3-213ENST00000563842 SAGE1Q9NXZ1 904 aa16.32■□□□□ 0.2
CLK3-213ENST00000563842 FAM198AQ9UFP1 575 aa16.32■□□□□ 0.2
CLK3-213ENST00000563842 FZD1Q9UP38 647 aa16.32■□□□□ 0.2
CLK3-213ENST00000563842 CSADQ9Y600 493 aa16.32■□□□□ 0.2
CLK3-213ENST00000563842 CDK5RAP2Q96SN8 1893 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 NPM3O75607 178 aaKnown RBP16.31■□□□□ 0.2
CLK3-213ENST00000563842 RGS3P49796 1198 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 INHBEP58166 350 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 MAP3K12Q12852 859 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 NFIAQ12857 509 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 SPRYD7Q5W111 196 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 CERS3Q8IU89 383 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 ZNF384Q8TF68 577 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 CRBNQ96SW2 442 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 ZNF341Q9BYN7 854 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 BCL11AQ9H165 835 aa16.31■□□□□ 0.2
CLK3-213ENST00000563842 CASP8AP2Q9UKL3 1982 aa16.3■□□□□ 0.2
CLK3-213ENST00000563842 MYH7P12883 1935 aa16.3■□□□□ 0.2
CLK3-213ENST00000563842 MANSC4A6NHS7 340 aaPredicted RBP16.3■□□□□ 0.2
CLK3-213ENST00000563842 IDH1O75874 414 aaKnown RBP16.3■□□□□ 0.2
CLK3-213ENST00000563842 HSPA8P11142 646 aaKnown RBP16.3■□□□□ 0.2
CLK3-213ENST00000563842 LBX1P52954 281 aa16.3■□□□□ 0.2
CLK3-213ENST00000563842 MLLT1Q03111 559 aaPredicted RBP16.3■□□□□ 0.2
CLK3-213ENST00000563842 ZSCAN29Q8IWY8 852 aaPredicted RBP16.3■□□□□ 0.2
CLK3-213ENST00000563842 CDAN1Q8IWY9 1227 aa16.3■□□□□ 0.2
CLK3-213ENST00000563842 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.3■□□□□ 0.2
CLK3-213ENST00000563842 FOCADQ5VW36 1801 aa16.3■□□□□ 0.2
CLK3-213ENST00000563842 WDHD1O75717 1129 aaPredicted RBP16.29■□□□□ 0.2
CLK3-213ENST00000563842 TM4SF4P48230 202 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms