RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ZKSCAN4Q969J2 545 aaPredicted RBP21.98■■□□□ 1.11
HDDC3-205ENST00000559898 GNL3LQ9NVN8 582 aaKnown RBP21.98■■□□□ 1.11
HDDC3-205ENST00000559898 FAM198AQ9UFP1 575 aa21.98■■□□□ 1.11
HDDC3-205ENST00000559898 MANSC4A6NHS7 340 aaPredicted RBP21.97■■□□□ 1.11
HDDC3-205ENST00000559898 CAP1Q01518 475 aa21.97■■□□□ 1.11
HDDC3-205ENST00000559898 CTU1Q7Z7A3 348 aaKnown RBP21.97■■□□□ 1.11
HDDC3-205ENST00000559898 FAM83AQ86UY5 434 aa21.97■■□□□ 1.11
HDDC3-205ENST00000559898 PANK1Q8TE04 598 aa21.97■■□□□ 1.11
HDDC3-205ENST00000559898 MS4A4AQ96JQ5 239 aa21.97■■□□□ 1.11
HDDC3-205ENST00000559898 SNCAIPQ9Y6H5 919 aa21.97■■□□□ 1.11
HDDC3-205ENST00000559898 MYO5AQ9Y4I1 1855 aaKnown RBP21.96■■□□□ 1.11
HDDC3-205ENST00000559898 ZBTB7BO15156 539 aaPredicted RBP21.96■■□□□ 1.11
HDDC3-205ENST00000559898 MAP3K9P80192 1104 aa21.96■■□□□ 1.11
HDDC3-205ENST00000559898 TBC1D9Q6ZT07 1266 aa21.96■■□□□ 1.11
HDDC3-205ENST00000559898 ITPRIPQ8IWB1 547 aa21.96■■□□□ 1.11
HDDC3-205ENST00000559898 USP40Q9NVE5 1235 aa21.96■■□□□ 1.11
HDDC3-205ENST00000559898 TMOD2Q9NZR1 351 aa21.96■■□□□ 1.11
HDDC3-205ENST00000559898 HMG20BQ9P0W2 317 aa21.96■■□□□ 1.11
HDDC3-205ENST00000559898 ABCF2Q9UG63 623 aa21.96■■□□□ 1.11
HDDC3-205ENST00000559898 SEMA3EO15041 775 aa21.95■■□□□ 1.1
HDDC3-205ENST00000559898 ATP8B2P98198 1209 aa21.95■■□□□ 1.1
HDDC3-205ENST00000559898 UNCXA6NJT0 531 aa21.94■■□□□ 1.1
HDDC3-205ENST00000559898 INPP5BP32019 993 aa21.94■■□□□ 1.1
HDDC3-205ENST00000559898 FKBP1CQ5VVH2 108 aa21.94■■□□□ 1.1
HDDC3-205ENST00000559898 SSH3Q8TE77 659 aa21.94■■□□□ 1.1
HDDC3-205ENST00000559898 BRI3BPQ8WY22 251 aa21.94■■□□□ 1.1
HDDC3-205ENST00000559898 OTUD5Q96G74 571 aa21.94■■□□□ 1.1
HDDC3-205ENST00000559898 WRNIP1Q96S55 665 aa21.94■■□□□ 1.1
HDDC3-205ENST00000559898 CFHR5Q9BXR6 569 aa21.94■■□□□ 1.1
HDDC3-205ENST00000559898 AKAP2Q9Y2D5 859 aa21.94■■□□□ 1.1
HDDC3-205ENST00000559898 TESPA1A2RU30 521 aaPredicted RBP21.93■■□□□ 1.1
HDDC3-205ENST00000559898 GAKO14976 1311 aa21.93■■□□□ 1.1
HDDC3-205ENST00000559898 G3BP1Q13283 466 aaKnown RBP eCLIP21.93■■□□□ 1.1
HDDC3-205ENST00000559898 SH3BP5LQ7L8J4 393 aa21.93■■□□□ 1.1
HDDC3-205ENST00000559898 FTSJ3Q8IY81 847 aaKnown RBP21.93■■□□□ 1.1
HDDC3-205ENST00000559898 FAM151AQ8WW52 585 aa21.93■■□□□ 1.1
HDDC3-205ENST00000559898 DDX4Q9NQI0 724 aaKnown RBP21.93■■□□□ 1.1
HDDC3-205ENST00000559898 ZSWIM8A7E2V4 1837 aa21.92■■□□□ 1.1
HDDC3-205ENST00000559898 DOCK2Q92608 1830 aa21.92■■□□□ 1.1
HDDC3-205ENST00000559898 RFX7Q2KHR2 1363 aa21.92■■□□□ 1.1
HDDC3-205ENST00000559898 RPAP1Q9BWH6 1393 aaPredicted RBP21.92■■□□□ 1.1
HDDC3-205ENST00000559898 MCAMP43121 646 aa21.92■■□□□ 1.1
HDDC3-205ENST00000559898 CRHR2Q13324 411 aa21.92■■□□□ 1.1
HDDC3-205ENST00000559898 MVPQ14764 893 aaKnown RBP21.92■■□□□ 1.1
HDDC3-205ENST00000559898 ZBTB22O15209 634 aa21.91■■□□□ 1.1
HDDC3-205ENST00000559898 FKTNO75072 461 aa21.91■■□□□ 1.1
HDDC3-205ENST00000559898 RGS3P49796 1198 aa21.91■■□□□ 1.1
HDDC3-205ENST00000559898 SOX10P56693 466 aa21.91■■□□□ 1.1
HDDC3-205ENST00000559898 MECOMQ03112 1051 aa21.91■■□□□ 1.1
HDDC3-205ENST00000559898 DBNDD2Q9BQY9 259 aa21.91■■□□□ 1.1
HDDC3-205ENST00000559898 SNRKQ9NRH2 765 aa21.91■■□□□ 1.1
HDDC3-205ENST00000559898 ATRNL1Q5VV63 1379 aa21.9■■□□□ 1.1
HDDC3-205ENST00000559898 PDS5AQ29RF7 1337 aaKnown RBP21.9■■□□□ 1.1
HDDC3-205ENST00000559898 ARID4AP29374 1257 aaPredicted RBP21.9■■□□□ 1.1
HDDC3-205ENST00000559898 BTDP43251 543 aa21.9■■□□□ 1.1
HDDC3-205ENST00000559898 INHBEP58166 350 aa21.9■■□□□ 1.1
HDDC3-205ENST00000559898 DZIP1Q86YF9 867 aaKnown RBP21.9■■□□□ 1.1
HDDC3-205ENST00000559898 FAM43AQ8N2R8 423 aa21.9■■□□□ 1.1
HDDC3-205ENST00000559898 SPATA5Q8NB90 893 aa21.9■■□□□ 1.1
HDDC3-205ENST00000559898 TLR7Q9NYK1 1049 aaKnown RBP21.9■■□□□ 1.1
HDDC3-205ENST00000559898 HPS5Q9UPZ3 1129 aa21.9■■□□□ 1.1
HDDC3-205ENST00000559898 CSADQ9Y600 493 aa21.9■■□□□ 1.1
HDDC3-205ENST00000559898 CCL15-CCL14A0A0B4J2E2 113 aa21.89■■□□□ 1.09
HDDC3-205ENST00000559898 SPDYE5A6NIY4 337 aa21.89■■□□□ 1.09
HDDC3-205ENST00000559898 SURF6O75683 361 aaKnown RBP21.89■■□□□ 1.09
HDDC3-205ENST00000559898 WDHD1O75717 1129 aaPredicted RBP21.89■■□□□ 1.09
HDDC3-205ENST00000559898 CCL15Q16663 113 aa21.89■■□□□ 1.09
HDDC3-205ENST00000559898 TNNI3KQ59H18 835 aa21.89■■□□□ 1.09
HDDC3-205ENST00000559898 NOM1Q5C9Z4 860 aaKnown RBP21.89■■□□□ 1.09
HDDC3-205ENST00000559898 FPGT-TNNI3KV9GXZ4 949 aa21.89■■□□□ 1.09
HDDC3-205ENST00000559898 MROH7-TTC4A0A0A0MT08 1334 aa21.88■■□□□ 1.09
HDDC3-205ENST00000559898 DDTLA6NHG4 134 aaPredicted RBP21.88■■□□□ 1.09
HDDC3-205ENST00000559898 IRF6O14896 467 aa21.88■■□□□ 1.09
HDDC3-205ENST00000559898 ALDH1A1P00352 501 aa21.88■■□□□ 1.09
HDDC3-205ENST00000559898 RHBDL3P58872 404 aa21.88■■□□□ 1.09
HDDC3-205ENST00000559898 GORABQ5T7V8 394 aa21.88■■□□□ 1.09
HDDC3-205ENST00000559898 CEP85Q6P2H3 762 aa21.88■■□□□ 1.09
HDDC3-205ENST00000559898 ZNF341Q9BYN7 854 aa21.88■■□□□ 1.09
HDDC3-205ENST00000559898 RGS19P49795 217 aa21.87■■□□□ 1.09
HDDC3-205ENST00000559898 PICALMQ13492 652 aa21.87■■□□□ 1.09
HDDC3-205ENST00000559898 ERICH6Q7L0X2 663 aa21.87■■□□□ 1.09
HDDC3-205ENST00000559898 CD99L2Q8TCZ2 262 aa21.87■■□□□ 1.09
HDDC3-205ENST00000559898 NSUN4Q96CB9 384 aaKnown RBP21.87■■□□□ 1.09
HDDC3-205ENST00000559898 FAM163AQ96GL9 167 aaPredicted RBP21.87■■□□□ 1.09
HDDC3-205ENST00000559898 IDI2Q9BXS1 227 aa21.87■■□□□ 1.09
HDDC3-205ENST00000559898 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.87■■□□□ 1.09
HDDC3-205ENST00000559898 ZNF112Q9UJU3 913 aa21.87■■□□□ 1.09
HDDC3-205ENST00000559898 HTTP42858 3142 aa21.87■■□□□ 1.09
HDDC3-205ENST00000559898 TNRC18O15417 2968 aaPredicted RBP21.87■■□□□ 1.09
HDDC3-205ENST00000559898 OS9Q13438 667 aaPredicted RBP21.86■■□□□ 1.09
HDDC3-205ENST00000559898 ZGPATQ8N5A5 531 aaKnown RBP21.86■■□□□ 1.09
HDDC3-205ENST00000559898 CCDC8Q9H0W5 538 aaPredicted RBP21.86■■□□□ 1.09
HDDC3-205ENST00000559898 NOP58Q9Y2X3 529 aaKnown RBP21.86■■□□□ 1.09
HDDC3-205ENST00000559898 CDK5RAP2Q96SN8 1893 aa21.86■■□□□ 1.09
HDDC3-205ENST00000559898 GTF2A2P52657 109 aa21.85■■□□□ 1.09
HDDC3-205ENST00000559898 DCAF15Q66K64 600 aa21.85■■□□□ 1.09
HDDC3-205ENST00000559898 ERO1BQ86YB8 467 aa21.85■■□□□ 1.09
HDDC3-205ENST00000559898 EAF2Q96CJ1 260 aaPredicted RBP21.85■■□□□ 1.09
HDDC3-205ENST00000559898 DBNLQ9UJU6 430 aaKnown RBP21.85■■□□□ 1.09
HDDC3-205ENST00000559898 NDUFB9Q9Y6M9 179 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms