RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 SLFN5Q08AF3 891 aa11.44□□□□□ -0.58
HDDC3-204ENST00000559834 SLC4A8Q2Y0W8 1093 aa11.44□□□□□ -0.58
HDDC3-204ENST00000559834 MIGA2Q7L4E1 593 aa11.44□□□□□ -0.58
HDDC3-204ENST00000559834 ZNF333Q96JL9 665 aa11.44□□□□□ -0.58
HDDC3-204ENST00000559834 PTCH2Q9Y6C5 1203 aa11.44□□□□□ -0.58
HDDC3-204ENST00000559834 KIAA0100Q14667 2235 aaKnown RBP11.43□□□□□ -0.58
HDDC3-204ENST00000559834 SEMA3EO15041 775 aa11.43□□□□□ -0.58
HDDC3-204ENST00000559834 CIAO1O76071 339 aa11.43□□□□□ -0.58
HDDC3-204ENST00000559834 LDHBP07195 334 aaKnown RBP11.43□□□□□ -0.58
HDDC3-204ENST00000559834 UBTFL1P0CB47 393 aaPredicted RBP11.43□□□□□ -0.58
HDDC3-204ENST00000559834 HOXD10P28358 340 aa11.43□□□□□ -0.58
HDDC3-204ENST00000559834 RFX5P48382 616 aaPredicted RBP11.43□□□□□ -0.58
HDDC3-204ENST00000559834 LACTBP83111 547 aaPredicted RBP11.43□□□□□ -0.58
HDDC3-204ENST00000559834 SMC4Q9NTJ3 1288 aa11.43□□□□□ -0.58
HDDC3-204ENST00000559834 RPAP1Q9BWH6 1393 aaPredicted RBP11.42□□□□□ -0.58
HDDC3-204ENST00000559834 INPP5BP32019 993 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 CAP1Q01518 475 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 TCP10Q12799 353 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 ATP2B3Q16720 1220 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 CDC42EP5Q6NZY7 148 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 ATG9AQ7Z3C6 839 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 ANKRD23Q86SG2 305 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 ZGPATQ8N5A5 531 aaKnown RBP11.42□□□□□ -0.58
HDDC3-204ENST00000559834 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.42□□□□□ -0.58
HDDC3-204ENST00000559834 USP40Q9NVE5 1235 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 ZNF112Q9UJU3 913 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 DENND2AQ9ULE3 1009 aa11.42□□□□□ -0.58
HDDC3-204ENST00000559834 LAMB1P07942 1786 aa11.41□□□□□ -0.58
HDDC3-204ENST00000559834 CT47B1P0C2W7 299 aaPredicted RBP11.41□□□□□ -0.58
HDDC3-204ENST00000559834 IL15P40933 162 aaPredicted RBP11.41□□□□□ -0.58
HDDC3-204ENST00000559834 HABP4Q5JVS0 413 aaKnown RBP11.41□□□□□ -0.58
HDDC3-204ENST00000559834 C17orf99Q6UX52 265 aa11.41□□□□□ -0.58
HDDC3-204ENST00000559834 SLF2Q8IX21 1173 aa11.41□□□□□ -0.58
HDDC3-204ENST00000559834 API5Q9BZZ5 524 aaKnown RBP11.41□□□□□ -0.58
HDDC3-204ENST00000559834 SIL1Q9H173 461 aa11.41□□□□□ -0.58
HDDC3-204ENST00000559834 KCNH4Q9UQ05 1017 aa11.41□□□□□ -0.58
HDDC3-204ENST00000559834 DAGLAQ9Y4D2 1042 aa11.41□□□□□ -0.58
HDDC3-204ENST00000559834 SALL1Q9NSC2 1324 aa11.4□□□□□ -0.58
HDDC3-204ENST00000559834 PDHXO00330 501 aa11.4□□□□□ -0.58
HDDC3-204ENST00000559834 CXCL11O14625 94 aa11.4□□□□□ -0.58
HDDC3-204ENST00000559834 ZBTB22O15209 634 aa11.4□□□□□ -0.58
HDDC3-204ENST00000559834 PRDX5P30044 214 aa11.4□□□□□ -0.58
HDDC3-204ENST00000559834 PSMC4P43686 418 aa11.4□□□□□ -0.58
HDDC3-204ENST00000559834 DIXDC1Q155Q3 683 aa11.4□□□□□ -0.58
HDDC3-204ENST00000559834 NOL9Q5SY16 702 aaKnown RBP11.4□□□□□ -0.58
HDDC3-204ENST00000559834 CPA4Q9UI42 421 aa11.4□□□□□ -0.58
HDDC3-204ENST00000559834 ENTPD3O75355 529 aa11.39□□□□□ -0.59
HDDC3-204ENST00000559834 FMNL1O95466 1100 aaPredicted RBP11.39□□□□□ -0.59
HDDC3-204ENST00000559834 MYCP01106 439 aaPredicted RBP11.39□□□□□ -0.59
HDDC3-204ENST00000559834 NFIAQ12857 509 aa11.39□□□□□ -0.59
HDDC3-204ENST00000559834 SPTY2D1Q68D10 685 aaPredicted RBP11.39□□□□□ -0.59
HDDC3-204ENST00000559834 FASTKD5Q7L8L6 764 aaKnown RBP11.39□□□□□ -0.59
HDDC3-204ENST00000559834 NKX2-3Q8TAU0 364 aa11.39□□□□□ -0.59
HDDC3-204ENST00000559834 RAET1EQ8TD07 263 aa11.39□□□□□ -0.59
HDDC3-204ENST00000559834 SH3TC2Q8TF17 1288 aa11.39□□□□□ -0.59
HDDC3-204ENST00000559834 ARAP2Q8WZ64 1704 aa11.39□□□□□ -0.59
HDDC3-204ENST00000559834 ARHGAP39Q9C0H5 1083 aa11.39□□□□□ -0.59
HDDC3-204ENST00000559834 FAM198AQ9UFP1 575 aa11.39□□□□□ -0.59
HDDC3-204ENST00000559834 SRRDQ9UH36 339 aa11.39□□□□□ -0.59
HDDC3-204ENST00000559834 NOB1Q9ULX3 412 aaKnown RBP11.39□□□□□ -0.59
HDDC3-204ENST00000559834 TNRC18O15417 2968 aaPredicted RBP11.38□□□□□ -0.59
HDDC3-204ENST00000559834 OTOFQ9HC10 1997 aa11.38□□□□□ -0.59
HDDC3-204ENST00000559834 CCDC102BQ68D86 513 aa11.38□□□□□ -0.59
HDDC3-204ENST00000559834 ZSCAN29Q8IWY8 852 aaPredicted RBP11.38□□□□□ -0.59
HDDC3-204ENST00000559834 TRMT2AQ8IZ69 625 aaKnown RBP11.38□□□□□ -0.59
HDDC3-204ENST00000559834 CDCA7LQ96GN5 454 aa11.38□□□□□ -0.59
HDDC3-204ENST00000559834 TRIM47Q96LD4 638 aa11.38□□□□□ -0.59
HDDC3-204ENST00000559834 PARK7Q99497 189 aaKnown RBP11.38□□□□□ -0.59
HDDC3-204ENST00000559834 IDI2Q9BXS1 227 aa11.38□□□□□ -0.59
HDDC3-204ENST00000559834 COPRSQ9NQ92 184 aa11.38□□□□□ -0.59
HDDC3-204ENST00000559834 PICK1Q9NRD5 415 aa11.38□□□□□ -0.59
HDDC3-204ENST00000559834 AKAP2Q9Y2D5 859 aa11.38□□□□□ -0.59
HDDC3-204ENST00000559834 GNAI3P08754 354 aa11.37□□□□□ -0.59
HDDC3-204ENST00000559834 GRK4P32298 578 aa11.37□□□□□ -0.59
HDDC3-204ENST00000559834 PHKA1P46020 1223 aa11.37□□□□□ -0.59
HDDC3-204ENST00000559834 FCGRTP55899 365 aa11.37□□□□□ -0.59
HDDC3-204ENST00000559834 DZIP1Q86YF9 867 aaKnown RBP11.37□□□□□ -0.59
HDDC3-204ENST00000559834 SCYL3Q8IZE3 742 aa11.37□□□□□ -0.59
HDDC3-204ENST00000559834 FAM163AQ96GL9 167 aaPredicted RBP11.37□□□□□ -0.59
HDDC3-204ENST00000559834 BIN2Q9UBW5 565 aaPredicted RBP11.37□□□□□ -0.59
HDDC3-204ENST00000559834 ABCF2Q9UG63 623 aa11.37□□□□□ -0.59
HDDC3-204ENST00000559834 LRRFIP2Q9Y608 721 aaKnown RBP11.37□□□□□ -0.59
HDDC3-204ENST00000559834 ZHX2Q9Y6X8 837 aa11.37□□□□□ -0.59
HDDC3-204ENST00000559834 PHF20L1A8MW92 1017 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 CTNND1O60716 968 aaKnown RBP11.36□□□□□ -0.59
HDDC3-204ENST00000559834 ECM2O94769 699 aaPredicted RBP11.36□□□□□ -0.59
HDDC3-204ENST00000559834 PTPRAP18433 802 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 OSBPP22059 807 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 RGS3P49796 1198 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 TIMM10P62072 90 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 UBXN2AP68543 259 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 MVPQ14764 893 aaKnown RBP11.36□□□□□ -0.59
HDDC3-204ENST00000559834 ZFPM1Q8IX07 1006 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 ARHGAP45Q92619 1136 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 PA2G4Q9UQ80 394 aaKnown RBP11.36□□□□□ -0.59
HDDC3-204ENST00000559834 SLC45A1Q9Y2W3 748 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 AK9Q5TCS8 1911 aa11.36□□□□□ -0.59
HDDC3-204ENST00000559834 PDS5AQ29RF7 1337 aaKnown RBP11.35□□□□□ -0.59
HDDC3-204ENST00000559834 LDHCP07864 332 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 ADORA1P30542 326 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms