RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 CYB5R4Q7L1T6 521 aa13.96□□□□□ -0.18
CCDC88C-211ENST00000556726 GNL3LQ9NVN8 582 aaKnown RBP13.96□□□□□ -0.18
CCDC88C-211ENST00000556726 COL15A1P39059 1388 aa13.96□□□□□ -0.18
CCDC88C-211ENST00000556726 CASP1P29466 404 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 ZBTB38Q8NAP3 1195 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 FANCLQ9NW38 375 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 TFCP2L1Q9NZI6 479 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 TERF1P54274 439 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 BRAPQ7Z569 592 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 SPATA5Q8NB90 893 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 DESI2Q9BSY9 194 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 PAXBP1Q9Y5B6 917 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 V9GY48 417 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 REREQ9P2R6 1566 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 SH3TC1Q8TE82 1336 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 CBFA2T2O43439 604 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 CAVIN2O95810 425 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 FDPSP14324 419 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 ERCC3P19447 782 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 NLRP5P59047 1200 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 ERCC6LQ2NKX8 1250 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 RABL6Q3YEC7 729 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 APOA5Q6Q788 366 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 UIMC1Q96RL1 719 aa13.95□□□□□ -0.18
CCDC88C-211ENST00000556726 C3P01024 1663 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 FOXN1O15353 648 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 LONRF3Q496Y0 759 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 UQCRFS1P1P0C7P4 283 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 CDC27P30260 824 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 TSR1Q2NL82 804 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 TTLL11Q8NHH1 800 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 TEX13AQ9BXU3 409 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 ZSWIM5Q9P217 1185 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 VWA3AA6NCI4 1184 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 ERVV-2B6SEH9 535 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 CCT6AP40227 531 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 KIF23Q02241 960 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 ARHGAP29Q52LW3 1261 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 CAVIN4Q5BKX8 364 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 IQCA1Q86XH1 822 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 SMYD4Q8IYR2 804 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 IFNL3Q8IZI9 196 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 SERTAD1Q9UHV2 236 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 STX8Q9UNK0 236 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 PCDHA5Q9Y5H7 936 aa13.94□□□□□ -0.18
CCDC88C-211ENST00000556726 TSPY2A6NKD2 308 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 PDE8BO95263 885 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 MYL5Q02045 173 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 FAM47AQ5JRC9 791 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 IFIT1BQ5T764 474 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 NLRP10Q86W26 655 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 RGPD8O14715 1765 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 NRXN3Q9Y4C0 1643 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 NEMFO60524 1076 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 SLU7O95391 586 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 PUM3Q15397 648 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 FAM182BQ5T319 152 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 USPL1Q5W0Q7 1092 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 KRI1Q8N9T8 703 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 WASF1Q92558 559 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 ARGLU1Q9NWB6 273 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 NFE2L3Q9Y4A8 694 aa13.93□□□□□ -0.18
CCDC88C-211ENST00000556726 PDE8AO60658 829 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 PCCAP05165 728 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 MCM7P33993 719 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 PDE4CQ08493 712 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 FILIP1LQ4L180 1135 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 BRINP3Q76B58 766 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 CATIPQ7Z7H3 387 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 CTCFLQ8NI51 663 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 CGNQ9P2M7 1197 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 PXDNLA1KZ92 1463 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 WDR17Q8IZU2 1322 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 CDC25AP30304 524 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 EXOSC10Q01780 885 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 GIGYF2Q6Y7W6 1299 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 ANKRD20A12PQ8NF67 263 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 SMARCC2Q8TAQ2 1214 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 CCDC12Q8WUD4 166 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 RTEL1Q9NZ71 1219 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 MEGF6O75095 1541 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 NLRP12P59046 1061 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 CCDC152Q4G0S7 254 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 BLZF1Q9H2G9 400 aa13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 KDM6AO15550 1401 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-211ENST00000556726 CCDC196A0A1B0GTZ2 297 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 WDHD1O75717 1129 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 USP5P45974 858 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 LCORLQ8N3X6 602 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 NOL10Q9BSC4 688 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 MKNK2Q9HBH9 465 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 ANKIB1Q9P2G1 1089 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 BAZ2BQ9UIF8 2168 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 GUCY1A2P33402 732 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 ZNF710Q8N1W2 664 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 CCDC150Q8NCX0 1101 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 CARD6Q9BX69 1037 aa13.91□□□□□ -0.18
CCDC88C-211ENST00000556726 PUF60Q9UHX1 559 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms