RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 UTP14AQ9BVJ6 771 aaKnown RBP10.96□□□□□ -0.66
SYNE2-213ENST00000554805 INCENPQ9NQS7 918 aa10.96□□□□□ -0.66
SYNE2-213ENST00000554805 DDX60Q8IY21 1712 aaKnown RBP10.96□□□□□ -0.66
SYNE2-213ENST00000554805 AXDND1Q5T1B0 1012 aaPredicted RBP10.96□□□□□ -0.66
SYNE2-213ENST00000554805 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.96□□□□□ -0.66
SYNE2-213ENST00000554805 UBXN4Q92575 508 aa10.96□□□□□ -0.66
SYNE2-213ENST00000554805 TMOD3Q9NYL9 352 aa10.96□□□□□ -0.66
SYNE2-213ENST00000554805 PCDH11XQ9BZA7 1347 aa10.96□□□□□ -0.66
SYNE2-213ENST00000554805 PCDH11YQ9BZA8 1340 aa10.96□□□□□ -0.66
SYNE2-213ENST00000554805 SLIT3O75094 1523 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 ANKRD18BA2A2Z9 1011 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 CYB5R4Q7L1T6 521 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 TBC1D10CQ8IV04 446 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 DNAJC10Q8IXB1 793 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 ATG3Q9NT62 314 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 SLC12A7Q9Y666 1083 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 CCP110O43303 1012 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 ITGA6P23229 1130 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 SSRP1Q08945 709 aaKnown RBP10.95□□□□□ -0.66
SYNE2-213ENST00000554805 ARHGAP29Q52LW3 1261 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 DPF2Q92785 391 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 NAPBQ9H115 298 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 SENP2Q9HC62 589 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 MROH7-TTC4A0A0A0MT08 1334 aa10.95□□□□□ -0.66
SYNE2-213ENST00000554805 ZMYM6O95789 1325 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 ZNF532Q9HCE3 1301 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 MCAMP43121 646 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 DHX8Q14562 1220 aaKnown RBP10.94□□□□□ -0.66
SYNE2-213ENST00000554805 NUP133Q8WUM0 1156 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 FANCLQ9NW38 375 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 HOOK1Q9UJC3 728 aaKnown RBP10.94□□□□□ -0.66
SYNE2-213ENST00000554805 PSDA5PKW4 1024 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-213ENST00000554805 ERVV-2B6SEH9 535 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 FOXP2O15409 715 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 KIF20AO95235 890 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 CDC27P30260 824 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 EVCP57679 992 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 APOA5Q6Q788 366 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 TRMT112Q9UI30 125 aaKnown RBP10.94□□□□□ -0.66
SYNE2-213ENST00000554805 KCNH3Q9ULD8 1083 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 NCAPHQ15003 741 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 SHC4Q6S5L8 630 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 BPIFA3Q9BQP9 254 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 ZKSCAN3Q9BRR0 538 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 GREM2Q9H772 168 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 PIH1D3Q9NQM4 214 aaKnown RBP10.94□□□□□ -0.66
SYNE2-213ENST00000554805 PCDHA5Q9Y5H7 936 aa10.94□□□□□ -0.66
SYNE2-213ENST00000554805 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.94□□□□□ -0.66
SYNE2-213ENST00000554805 ERICH4A6NGS2 130 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 ADD2P35612 726 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 CTDSPL2Q05D32 466 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 TTF1Q15361 905 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-213ENST00000554805 ISCA1Q9BUE6 129 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 TMEM232C9JQI7 657 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 UBE2Q2LH0YL09 131 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 SH2B2O14492 632 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-213ENST00000554805 PCCAP05165 728 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-213ENST00000554805 LONRF3Q496Y0 759 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 TICAM2Q86XR7 235 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 TRIM22Q8IYM9 498 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 ARGLU1Q9NWB6 273 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-213ENST00000554805 KCNJ14Q9UNX9 436 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 MORC2Q9Y6X9 1032 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-213ENST00000554805 IL2RBP14784 551 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 PHKA1P46020 1223 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 TDO2P48775 406 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 ETF1P62495 437 aaKnown RBP10.93□□□□□ -0.66
SYNE2-213ENST00000554805 GABPB1Q06547 395 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-213ENST00000554805 LRRN4CLQ8ND94 238 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 WWC3Q9ULE0 1092 aa10.93□□□□□ -0.66
SYNE2-213ENST00000554805 IKBKBO14920 756 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 STARD3NLO95772 234 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 PDE6AP16499 860 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 BMS1Q14692 1282 aaKnown RBP10.92□□□□□ -0.66
SYNE2-213ENST00000554805 ZNF827Q17R98 1081 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 ZBTB38Q8NAP3 1195 aaPredicted RBP10.92□□□□□ -0.66
SYNE2-213ENST00000554805 C5P01031 1676 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 ERICH2A1L162 156 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 BTBD18B2RXH4 712 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 IRS4O14654 1257 aaPredicted RBP10.92□□□□□ -0.66
SYNE2-213ENST00000554805 FOXN1O15353 648 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 ZSCAN12O43309 604 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 CUTAO60888 179 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 GNG11P61952 73 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 CREBRFQ8IUR6 639 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 TRMT44Q8IYL2 757 aaKnown RBP10.92□□□□□ -0.66
SYNE2-213ENST00000554805 CMTR1Q8N1G2 835 aaKnown RBP10.92□□□□□ -0.66
SYNE2-213ENST00000554805 KRI1Q8N9T8 703 aaKnown RBP10.92□□□□□ -0.66
SYNE2-213ENST00000554805 CARD6Q9BX69 1037 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 MBD4O95243 580 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 AKAP17AQ02040 695 aaKnown RBP10.92□□□□□ -0.66
SYNE2-213ENST00000554805 KLHL10Q6JEL2 608 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 KRBA2Q6ZNG9 492 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 FBXL16Q8N461 479 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 MAGEB6Q8N7X4 407 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 TIGD1Q96MW7 591 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.92□□□□□ -0.66
SYNE2-213ENST00000554805 ASAP1Q9ULH1 1129 aa10.92□□□□□ -0.66
SYNE2-213ENST00000554805 SRCAPQ6ZRS2 3230 aa10.91□□□□□ -0.66
SYNE2-213ENST00000554805 TMCO3Q6UWJ1 677 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms