RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 EPHA10Q5JZY3 1008 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 OTUD7BQ6GQQ9 843 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 TMCO3Q6UWJ1 677 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 NSUN7Q8NE18 718 aaKnown RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 PUS3Q9BZE2 481 aaKnown RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 GBP3Q9H0R5 595 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 C1orf167Q5SNV9 1468 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 H7C1W4 665 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 CUTAO60888 179 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 ADALQ6DHV7 355 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 IMPACTQ9P2X3 320 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 IQSEC3Q9UPP2 1182 aaPredicted RBP6.61□□□□□ -1.35
VPS50-220ENST00000544910 TOPAZ1Q8N9V7 1692 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 YEATS4O95619 227 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 ADORA1P30542 326 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 SLF2Q8IX21 1173 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 CCDC12Q8WUD4 166 aaPredicted RBP6.61□□□□□ -1.35
VPS50-220ENST00000544910 RPGRQ92834 1020 aaKnown RBP6.61□□□□□ -1.35
VPS50-220ENST00000544910 NUP88Q99567 741 aaPredicted RBP6.61□□□□□ -1.35
VPS50-220ENST00000544910 ZKSCAN3Q9BRR0 538 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 CCDC87Q9NVE4 849 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 SLAIN2Q9P270 581 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 DENND2AQ9ULE3 1009 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 ERICH4A6NGS2 130 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 KRT18P05783 430 aaKnown RBP6.61□□□□□ -1.35
VPS50-220ENST00000544910 RESTQ13127 1097 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 NBPF5PQ86XG9 351 aaPredicted RBP6.61□□□□□ -1.35
VPS50-220ENST00000544910 ZNF397Q8NF99 534 aaPredicted RBP6.61□□□□□ -1.35
VPS50-220ENST00000544910 CCDC148Q8NFR7 591 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 PRDM10Q9NQV6 1147 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 UTYO14607 1347 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 ZNF202O95125 648 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 BAG3O95817 575 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 AFMP43652 599 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 EIF5P55010 431 aaKnown RBP6.61□□□□□ -1.35
VPS50-220ENST00000544910 IQCEQ6IPM2 695 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 USP28Q96RU2 1077 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 TMX1Q9H3N1 280 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 INCENPQ9NQS7 918 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 SALL3Q9BXA9 1300 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 TRIM75PA6NK02 468 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 LMOD1P29536 600 aaPredicted RBP6.61□□□□□ -1.35
VPS50-220ENST00000544910 ATP2B2Q01814 1243 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 MYL5Q02045 173 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 KRT40Q6A162 431 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 KIAA1328Q86T90 577 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 DHX58Q96C10 678 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 ANKRD2Q9GZV1 360 aa6.61□□□□□ -1.35
VPS50-220ENST00000544910 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS50-220ENST00000544910 PIK3C2AO00443 1686 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 CYP27B1O15528 508 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 IKQ13123 557 aaPredicted RBP6.6□□□□□ -1.35
VPS50-220ENST00000544910 RILPL1Q5EBL4 403 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 RRAGBQ5VZM2 374 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 BBXQ8WY36 941 aaPredicted RBP6.6□□□□□ -1.35
VPS50-220ENST00000544910 TANGO6Q9C0B7 1094 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 TCEAL9Q9UHQ7 104 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 SPATA31A3Q5VYP0 1347 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 TDRD7Q8NHU6 1098 aaKnown RBP6.6□□□□□ -1.35
VPS50-220ENST00000544910 CPLX3Q8WVH0 158 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 SETDB2Q96T68 719 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 RIOK3O14730 519 aaKnown RBP6.6□□□□□ -1.35
VPS50-220ENST00000544910 FGAP02671 866 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 LDHCP07864 332 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 TSPY3P0CV98 308 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 TSPY8P0CW00 308 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 SLC4A8Q2Y0W8 1093 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 FKBP15Q5T1M5 1219 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 MYSM1Q5VVJ2 828 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 SMAP1Q8IYB5 467 aaPredicted RBP6.6□□□□□ -1.35
VPS50-220ENST00000544910 KCNH3Q9ULD8 1083 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 PALLDQ8WX93 1383 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 GOLGA6L10A6NI86 522 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 PHKBQ93100 1093 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 GREM2Q9H772 168 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 RTEL1Q9NZ71 1219 aa6.6□□□□□ -1.35
VPS50-220ENST00000544910 SETD1BQ9UPS6 1966 aaKnown RBP6.6□□□□□ -1.35
VPS50-220ENST00000544910 SPDYE4A6NLX3 237 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 POTEB2H3BUK9 544 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 SLU7O95391 586 aaKnown RBP6.59□□□□□ -1.35
VPS50-220ENST00000544910 STAT6P42226 847 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 TMEM266Q2M3C6 531 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 TSG101Q99816 390 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 CABP5Q9NP86 173 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 CTDP1Q9Y5B0 961 aaPredicted RBP6.59□□□□□ -1.35
VPS50-220ENST00000544910 CLIC4Q9Y696 253 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 PXDNQ92626 1479 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 FAM208AQ9UK61 1670 aaKnown RBP6.59□□□□□ -1.35
VPS50-220ENST00000544910 MYO1BO43795 1136 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 UBE3CQ15386 1083 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 FAM114A1Q8IWE2 563 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 MYL10Q9BUA6 226 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 ZHX1Q9UKY1 873 aaPredicted RBP6.59□□□□□ -1.35
VPS50-220ENST00000544910 PCDHA7Q9UN72 937 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 KIF1AQ12756 1690 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 MPHOSPH10O00566 681 aaKnown RBP6.59□□□□□ -1.35
VPS50-220ENST00000544910 PFKFB1P16118 471 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 FOXO4P98177 505 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 FANCCQ00597 558 aa6.59□□□□□ -1.35
VPS50-220ENST00000544910 ZNF804AQ7Z570 1209 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms