RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 FLOT1O75955 427 aa21.62■■□□□ 1.05
HDAC4-215ENST00000543185 LIN9Q5TKA1 542 aa21.62■■□□□ 1.05
HDAC4-215ENST00000543185 PPP1R42Q7Z4L9 355 aa21.62■■□□□ 1.05
HDAC4-215ENST00000543185 CABP5Q9NP86 173 aa21.62■■□□□ 1.05
HDAC4-215ENST00000543185 ZMAT2Q96NC0 199 aaKnown RBP21.62■■□□□ 1.05
HDAC4-215ENST00000543185 MYD88Q99836 296 aa21.62■■□□□ 1.05
HDAC4-215ENST00000543185 PFDN4Q9NQP4 134 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 ZMYM3Q14202 1370 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 TLDC2A0PJX2 215 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 KRT79Q5XKE5 535 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 DTHD1Q6ZMT9 781 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 Q6ZUG5 572 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 RNF40O75150 1001 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 GLT8D2Q9H1C3 349 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 ZNF445P59923 1031 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 PRPF31Q8WWY3 499 aaKnown RBP21.61■■□□□ 1.05
HDAC4-215ENST00000543185 DRC3Q9H069 523 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 AGTPBP1Q9UPW5 1226 aa21.61■■□□□ 1.05
HDAC4-215ENST00000543185 ZMYM4Q5VZL5 1548 aa21.6■■□□□ 1.05
HDAC4-215ENST00000543185 PPP4R1Q8TF05 950 aa21.6■■□□□ 1.05
HDAC4-215ENST00000543185 PDE1AP54750 535 aa21.6■■□□□ 1.05
HDAC4-215ENST00000543185 SOS1Q07889 1333 aaPredicted RBP21.6■■□□□ 1.05
HDAC4-215ENST00000543185 RUFY3Q7L099 469 aa21.6■■□□□ 1.05
HDAC4-215ENST00000543185 KLHL14Q9P2G3 628 aa21.6■■□□□ 1.05
HDAC4-215ENST00000543185 CCDC84Q86UT8 332 aaPredicted RBP21.6■■□□□ 1.05
HDAC4-215ENST00000543185 GOLGA8KD6RF30 607 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 SLC8A3P57103 927 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 ARMC9Q7Z3E5 817 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 MAIP1Q8WWC4 291 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 BRF1Q92994 677 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 ANKRD20A3Q5VUR7 823 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 PNMA8AQ86V59 439 aaPredicted RBP21.59■■□□□ 1.05
HDAC4-215ENST00000543185 CCDC65Q8IXS2 484 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 SECISBP2LQ93073 1101 aaKnown RBP21.59■■□□□ 1.05
HDAC4-215ENST00000543185 HOMER3Q9NSC5 361 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 CCDC8Q9H0W5 538 aaPredicted RBP21.59■■□□□ 1.05
HDAC4-215ENST00000543185 NUP160Q12769 1436 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 PLCG2P16885 1265 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 RBM26Q5T8P6 1007 aaKnown RBP21.59■■□□□ 1.05
HDAC4-215ENST00000543185 RRP36Q96EU6 259 aaKnown RBP21.59■■□□□ 1.05
HDAC4-215ENST00000543185 MARCKSP29966 332 aaPredicted RBP21.59■■□□□ 1.05
HDAC4-215ENST00000543185 RASEFQ8IZ41 740 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 MICAL1Q8TDZ2 1067 aa21.59■■□□□ 1.05
HDAC4-215ENST00000543185 ZRANB1Q9UGI0 708 aa21.58■■□□□ 1.05
HDAC4-215ENST00000543185 MAP3K2Q9Y2U5 619 aa21.58■■□□□ 1.05
HDAC4-215ENST00000543185 OAS2P29728 719 aaKnown RBP21.58■■□□□ 1.05
HDAC4-215ENST00000543185 NAPAP54920 295 aa21.58■■□□□ 1.05
HDAC4-215ENST00000543185 GCC2Q8IWJ2 1684 aa21.58■■□□□ 1.05
HDAC4-215ENST00000543185 PRXQ9BXM0 1461 aa21.58■■□□□ 1.05
HDAC4-215ENST00000543185 CCDC51Q96ER9 411 aa21.58■■□□□ 1.05
HDAC4-215ENST00000543185 STX10O60499 249 aa21.58■■□□□ 1.05
HDAC4-215ENST00000543185 SLC9C1Q4G0N8 1177 aa21.58■■□□□ 1.05
HDAC4-215ENST00000543185 STX8Q9UNK0 236 aa21.58■■□□□ 1.05
HDAC4-215ENST00000543185 HEATR3Q7Z4Q2 680 aa21.58■■□□□ 1.04
HDAC4-215ENST00000543185 COG7P83436 770 aa21.58■■□□□ 1.04
HDAC4-215ENST00000543185 KARSQ15046 597 aaKnown RBP21.58■■□□□ 1.04
HDAC4-215ENST00000543185 ELF2Q15723 593 aa21.58■■□□□ 1.04
HDAC4-215ENST00000543185 UTP14CQ5TAP6 766 aaKnown RBP21.58■■□□□ 1.04
HDAC4-215ENST00000543185 HMGXB3Q12766 1538 aa21.58■■□□□ 1.04
HDAC4-215ENST00000543185 PHBP35232 272 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 TMEM110-MUSTN1A8MSY1 372 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 SPOPO43791 374 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 GSDMBQ8TAX9 411 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 RIOK3O14730 519 aaKnown RBP21.57■■□□□ 1.04
HDAC4-215ENST00000543185 SNCBQ16143 134 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 WDR44Q5JSH3 913 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 HHATQ5VTY9 493 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 ZNF354CQ86Y25 554 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 TRMT112Q9UI30 125 aaKnown RBP21.57■■□□□ 1.04
HDAC4-215ENST00000543185 APBA1Q02410 837 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 TROVE2P10155 538 aaKnown RBP eCLIP21.57■■□□□ 1.04
HDAC4-215ENST00000543185 CACYBPQ9HB71 228 aaKnown RBP21.57■■□□□ 1.04
HDAC4-215ENST00000543185 RBM8AQ9Y5S9 174 aaKnown RBP21.57■■□□□ 1.04
HDAC4-215ENST00000543185 AOX1Q06278 1338 aa21.57■■□□□ 1.04
HDAC4-215ENST00000543185 FAM71BQ8TC56 605 aa21.56■■□□□ 1.04
HDAC4-215ENST00000543185 PDCD2Q16342 344 aaPredicted RBP21.56■■□□□ 1.04
HDAC4-215ENST00000543185 KIFC2Q96AC6 838 aa21.56■■□□□ 1.04
HDAC4-215ENST00000543185 EIF2AQ9BY44 585 aaKnown RBP21.56■■□□□ 1.04
HDAC4-215ENST00000543185 CALUO43852 315 aaPredicted RBP21.56■■□□□ 1.04
HDAC4-215ENST00000543185 LEO1Q8WVC0 666 aaPredicted RBP21.56■■□□□ 1.04
HDAC4-215ENST00000543185 SMTNP53814 917 aa21.56■■□□□ 1.04
HDAC4-215ENST00000543185 ZFYVE9O95405 1425 aa21.56■■□□□ 1.04
HDAC4-215ENST00000543185 ARHGEF12Q9NZN5 1544 aa21.56■■□□□ 1.04
HDAC4-215ENST00000543185 PDE1CQ14123 709 aaPredicted RBP21.56■■□□□ 1.04
HDAC4-215ENST00000543185 DHX58Q96C10 678 aa21.56■■□□□ 1.04
HDAC4-215ENST00000543185 LRRD1A4D1F6 860 aa21.55■■□□□ 1.04
HDAC4-215ENST00000543185 FAM204AQ9H8W3 233 aa21.55■■□□□ 1.04
HDAC4-215ENST00000543185 MAGI1Q96QZ7 1491 aaPredicted RBP21.55■■□□□ 1.04
HDAC4-215ENST00000543185 PROSER2Q86WR7 435 aaPredicted RBP21.55■■□□□ 1.04
HDAC4-215ENST00000543185 EFCAB13Q8IY85 973 aa21.55■■□□□ 1.04
HDAC4-215ENST00000543185 TRIM58Q8NG06 486 aa21.55■■□□□ 1.04
HDAC4-215ENST00000543185 SLC4A8Q2Y0W8 1093 aa21.55■■□□□ 1.04
HDAC4-215ENST00000543185 MLKLQ8NB16 471 aa21.55■■□□□ 1.04
HDAC4-215ENST00000543185 CCDC152Q4G0S7 254 aa21.54■■□□□ 1.04
HDAC4-215ENST00000543185 UBE3BQ7Z3V4 1068 aa21.54■■□□□ 1.04
HDAC4-215ENST00000543185 CERS3Q8IU89 383 aa21.54■■□□□ 1.04
HDAC4-215ENST00000543185 ZKSCAN3Q9BRR0 538 aa21.54■■□□□ 1.04
HDAC4-215ENST00000543185 ZNF75DP51815 510 aa21.54■■□□□ 1.04
HDAC4-215ENST00000543185 NOC4LQ9BVI4 516 aaKnown RBP21.54■■□□□ 1.04
HDAC4-215ENST00000543185 RPAINQ86UA6 219 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms