RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 FGFR2P21802 821 aa19.31■□□□□ 0.68
RTN3-211ENST00000542238 LACTBP83111 547 aaPredicted RBP19.31■□□□□ 0.68
RTN3-211ENST00000542238 USP44Q9H0E7 712 aa19.31■□□□□ 0.68
RTN3-211ENST00000542238 ZNF316A6NFI3 1004 aaPredicted RBP19.3■□□□□ 0.68
RTN3-211ENST00000542238 PPATQ06203 517 aa19.3■□□□□ 0.68
RTN3-211ENST00000542238 MIGA2Q7L4E1 593 aa19.3■□□□□ 0.68
RTN3-211ENST00000542238 LPIN2Q92539 896 aa19.3■□□□□ 0.68
RTN3-211ENST00000542238 ZNF521Q96K83 1311 aa19.29■□□□□ 0.68
RTN3-211ENST00000542238 EYA2O00167 538 aa19.29■□□□□ 0.68
RTN3-211ENST00000542238 PRMT2P55345 433 aa19.29■□□□□ 0.68
RTN3-211ENST00000542238 FAM151AQ8WW52 585 aa19.29■□□□□ 0.68
RTN3-211ENST00000542238 MKI67P46013 3256 aaKnown RBP19.29■□□□□ 0.68
RTN3-211ENST00000542238 ZSWIM8A7E2V4 1837 aa19.28■□□□□ 0.68
RTN3-211ENST00000542238 MYCP01106 439 aaPredicted RBP19.28■□□□□ 0.68
RTN3-211ENST00000542238 SSH1Q8WYL5 1049 aa19.28■□□□□ 0.68
RTN3-211ENST00000542238 ARHGAP39Q9C0H5 1083 aa19.28■□□□□ 0.68
RTN3-211ENST00000542238 E9PSI1 815 aa19.27■□□□□ 0.68
RTN3-211ENST00000542238 INPP5BP32019 993 aa19.27■□□□□ 0.68
RTN3-211ENST00000542238 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.27■□□□□ 0.68
RTN3-211ENST00000542238 SH3TC2Q8TF17 1288 aa19.27■□□□□ 0.68
RTN3-211ENST00000542238 GNL3LQ9NVN8 582 aaKnown RBP19.27■□□□□ 0.68
RTN3-211ENST00000542238 RFX5P48382 616 aaPredicted RBP19.26■□□□□ 0.67
RTN3-211ENST00000542238 TCP10Q12799 353 aa19.26■□□□□ 0.67
RTN3-211ENST00000542238 ANKRD23Q86SG2 305 aa19.26■□□□□ 0.67
RTN3-211ENST00000542238 DAGLAQ9Y4D2 1042 aa19.26■□□□□ 0.67
RTN3-211ENST00000542238 CEP290O15078 2479 aa19.26■□□□□ 0.67
RTN3-211ENST00000542238 LDHBP07195 334 aaKnown RBP19.25■□□□□ 0.67
RTN3-211ENST00000542238 HOXD10P28358 340 aa19.25■□□□□ 0.67
RTN3-211ENST00000542238 CDC42EP5Q6NZY7 148 aa19.25■□□□□ 0.67
RTN3-211ENST00000542238 C17orf99Q6UX52 265 aa19.25■□□□□ 0.67
RTN3-211ENST00000542238 CPA4Q9UI42 421 aa19.25■□□□□ 0.67
RTN3-211ENST00000542238 ZNF112Q9UJU3 913 aa19.25■□□□□ 0.67
RTN3-211ENST00000542238 FBXO3Q9UK99 471 aa19.25■□□□□ 0.67
RTN3-211ENST00000542238 PDHXO00330 501 aa19.24■□□□□ 0.67
RTN3-211ENST00000542238 PSMC4P43686 418 aa19.24■□□□□ 0.67
RTN3-211ENST00000542238 DIXDC1Q155Q3 683 aa19.24■□□□□ 0.67
RTN3-211ENST00000542238 ATP2B3Q16720 1220 aa19.24■□□□□ 0.67
RTN3-211ENST00000542238 ATG9AQ7Z3C6 839 aa19.24■□□□□ 0.67
RTN3-211ENST00000542238 USP40Q9NVE5 1235 aa19.24■□□□□ 0.67
RTN3-211ENST00000542238 CEP126Q9P2H0 1117 aa19.24■□□□□ 0.67
RTN3-211ENST00000542238 KCNH4Q9UQ05 1017 aa19.24■□□□□ 0.67
RTN3-211ENST00000542238 BRCA2P51587 3418 aa19.23■□□□□ 0.67
RTN3-211ENST00000542238 ECM2O94769 699 aaPredicted RBP19.23■□□□□ 0.67
RTN3-211ENST00000542238 FMNL1O95466 1100 aaPredicted RBP19.23■□□□□ 0.67
RTN3-211ENST00000542238 UBTFL1P0CB47 393 aaPredicted RBP19.23■□□□□ 0.67
RTN3-211ENST00000542238 ALDH1L2Q3SY69 923 aa19.23■□□□□ 0.67
RTN3-211ENST00000542238 SIL1Q9H173 461 aa19.23■□□□□ 0.67
RTN3-211ENST00000542238 MYH2Q9UKX2 1941 aa19.22■□□□□ 0.67
RTN3-211ENST00000542238 CIAO1O76071 339 aa19.22■□□□□ 0.67
RTN3-211ENST00000542238 PRDX5P30044 214 aa19.22■□□□□ 0.67
RTN3-211ENST00000542238 NFIAQ12857 509 aa19.22■□□□□ 0.67
RTN3-211ENST00000542238 NOL9Q5SY16 702 aaKnown RBP19.22■□□□□ 0.67
RTN3-211ENST00000542238 RAET1EQ8TD07 263 aa19.22■□□□□ 0.67
RTN3-211ENST00000542238 SRRDQ9UH36 339 aa19.22■□□□□ 0.67
RTN3-211ENST00000542238 DENND2AQ9ULE3 1009 aa19.22■□□□□ 0.67
RTN3-211ENST00000542238 HDAC5Q9UQL6 1122 aa19.22■□□□□ 0.67
RTN3-211ENST00000542238 SEMA3EO15041 775 aa19.21■□□□□ 0.67
RTN3-211ENST00000542238 TRIM47Q96LD4 638 aa19.21■□□□□ 0.67
RTN3-211ENST00000542238 PARK7Q99497 189 aaKnown RBP19.21■□□□□ 0.67
RTN3-211ENST00000542238 SMC4Q9NTJ3 1288 aa19.21■□□□□ 0.67
RTN3-211ENST00000542238 FAM198AQ9UFP1 575 aa19.21■□□□□ 0.67
RTN3-211ENST00000542238 SALL1Q9NSC2 1324 aa19.21■□□□□ 0.67
RTN3-211ENST00000542238 DOCK2Q92608 1830 aa19.21■□□□□ 0.67
RTN3-211ENST00000542238 CXCL11O14625 94 aa19.2■□□□□ 0.66
RTN3-211ENST00000542238 SLFN5Q08AF3 891 aa19.2■□□□□ 0.66
RTN3-211ENST00000542238 ZGPATQ8N5A5 531 aaKnown RBP19.2■□□□□ 0.66
RTN3-211ENST00000542238 NKX2-3Q8TAU0 364 aa19.2■□□□□ 0.66
RTN3-211ENST00000542238 OSBPP22059 807 aa19.19■□□□□ 0.66
RTN3-211ENST00000542238 CTGFP29279 349 aa19.19■□□□□ 0.66
RTN3-211ENST00000542238 GRK4P32298 578 aa19.19■□□□□ 0.66
RTN3-211ENST00000542238 IL15P40933 162 aaPredicted RBP19.19■□□□□ 0.66
RTN3-211ENST00000542238 PICK1Q9NRD5 415 aa19.19■□□□□ 0.66
RTN3-211ENST00000542238 COLQQ9Y215 455 aaPredicted RBP19.19■□□□□ 0.66
RTN3-211ENST00000542238 MGAMO43451 1857 aa19.19■□□□□ 0.66
RTN3-211ENST00000542238 MYPNQ86TC9 1320 aa19.19■□□□□ 0.66
RTN3-211ENST00000542238 ADGRA2Q96PE1 1338 aa19.19■□□□□ 0.66
RTN3-211ENST00000542238 PHKA1P46020 1223 aa19.18■□□□□ 0.66
RTN3-211ENST00000542238 FXR1P51114 621 aaKnown RBP eCLIP19.18■□□□□ 0.66
RTN3-211ENST00000542238 MTFR1Q15390 333 aa19.18■□□□□ 0.66
RTN3-211ENST00000542238 FASTKD5Q7L8L6 764 aaKnown RBP19.18■□□□□ 0.66
RTN3-211ENST00000542238 SLF2Q8IX21 1173 aa19.18■□□□□ 0.66
RTN3-211ENST00000542238 BIN2Q9UBW5 565 aaPredicted RBP19.18■□□□□ 0.66
RTN3-211ENST00000542238 H0YGN5 161 aa19.17■□□□□ 0.66
RTN3-211ENST00000542238 ENTPD3O75355 529 aa19.17■□□□□ 0.66
RTN3-211ENST00000542238 RGS3P49796 1198 aa19.17■□□□□ 0.66
RTN3-211ENST00000542238 FCGRTP55899 365 aa19.17■□□□□ 0.66
RTN3-211ENST00000542238 MOGSQ13724 837 aa19.17■□□□□ 0.66
RTN3-211ENST00000542238 ZSCAN29Q8IWY8 852 aaPredicted RBP19.17■□□□□ 0.66
RTN3-211ENST00000542238 ZFPM1Q8IX07 1006 aa19.17■□□□□ 0.66
RTN3-211ENST00000542238 IDI2Q9BXS1 227 aa19.17■□□□□ 0.66
RTN3-211ENST00000542238 ZHX2Q9Y6X8 837 aa19.17■□□□□ 0.66
RTN3-211ENST00000542238 UBXN2AP68543 259 aa19.16■□□□□ 0.66
RTN3-211ENST00000542238 CCDC102BQ68D86 513 aa19.16■□□□□ 0.66
RTN3-211ENST00000542238 DZIP1Q86YF9 867 aaKnown RBP19.16■□□□□ 0.66
RTN3-211ENST00000542238 SCYL3Q8IZE3 742 aa19.16■□□□□ 0.66
RTN3-211ENST00000542238 DPF3Q92784 378 aa19.16■□□□□ 0.66
RTN3-211ENST00000542238 LRRFIP2Q9Y608 721 aaKnown RBP19.16■□□□□ 0.66
RTN3-211ENST00000542238 TRIOBPQ9H2D6 2365 aa19.15■□□□□ 0.66
RTN3-211ENST00000542238 PHF20L1A8MW92 1017 aa19.15■□□□□ 0.66
RTN3-211ENST00000542238 ZBTB22O15209 634 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 148.5 ms