RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ECE1P42892 770 aa14.4□□□□□ -0.1
CLIP1-208ENST00000537004 DIXDC1Q155Q3 683 aa14.4□□□□□ -0.1
CLIP1-208ENST00000537004 CDAN1Q8IWY9 1227 aa14.4□□□□□ -0.1
CLIP1-208ENST00000537004 WDR66Q8TBY9 1149 aa14.4□□□□□ -0.1
CLIP1-208ENST00000537004 SLKQ9H2G2 1235 aaPredicted RBP14.4□□□□□ -0.1
CLIP1-208ENST00000537004 GNL3LQ9NVN8 582 aaKnown RBP14.4□□□□□ -0.1
CLIP1-208ENST00000537004 ZNF70Q9UC06 446 aaPredicted RBP14.4□□□□□ -0.1
CLIP1-208ENST00000537004 TTC41PQ6P2S7 1318 aa14.4□□□□□ -0.1
CLIP1-208ENST00000537004 TCP10L2B9ZVM9 353 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 FOXN1O15353 648 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 CHMLP26374 656 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 ZNF157P51786 506 aaPredicted RBP14.39□□□□□ -0.11
CLIP1-208ENST00000537004 TTLL12Q14166 644 aaPredicted RBP14.39□□□□□ -0.11
CLIP1-208ENST00000537004 RASA3Q14644 834 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 SPDYE2Q495Y8 402 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 RGMBQ6NW40 437 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 TEKT1Q969V4 418 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 HHIPL1Q96JK4 782 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 ANTXR1Q9H6X2 564 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 WBP1LQ9NX94 342 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 DENND2AQ9ULE3 1009 aa14.39□□□□□ -0.11
CLIP1-208ENST00000537004 TNNI3KQ59H18 835 aa14.38□□□□□ -0.11
CLIP1-208ENST00000537004 GORABQ5T7V8 394 aa14.38□□□□□ -0.11
CLIP1-208ENST00000537004 NBPF12Q5TAG4 269 aaPredicted RBP14.38□□□□□ -0.11
CLIP1-208ENST00000537004 APOBEC3HQ6NTF7 200 aaKnown RBP14.38□□□□□ -0.11
CLIP1-208ENST00000537004 ESYT1Q9BSJ8 1104 aa14.38□□□□□ -0.11
CLIP1-208ENST00000537004 FPGT-TNNI3KV9GXZ4 949 aa14.38□□□□□ -0.11
CLIP1-208ENST00000537004 FAM155AB1AL88 458 aaPredicted RBP14.37□□□□□ -0.11
CLIP1-208ENST00000537004 IFIT2P09913 472 aaKnown RBP14.37□□□□□ -0.11
CLIP1-208ENST00000537004 PRKCSHP14314 528 aaPredicted RBP14.37□□□□□ -0.11
CLIP1-208ENST00000537004 COL13A1Q5TAT6 717 aaPredicted RBP14.37□□□□□ -0.11
CLIP1-208ENST00000537004 DBNDD2Q9BQY9 259 aa14.37□□□□□ -0.11
CLIP1-208ENST00000537004 TLR7Q9NYK1 1049 aaKnown RBP14.37□□□□□ -0.11
CLIP1-208ENST00000537004 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.37□□□□□ -0.11
CLIP1-208ENST00000537004 ABCF2Q9UG63 623 aa14.37□□□□□ -0.11
CLIP1-208ENST00000537004 GLRX3O76003 335 aaKnown RBP14.37□□□□□ -0.11
CLIP1-208ENST00000537004 MAP4K4O95819 1239 aaPredicted RBP14.37□□□□□ -0.11
CLIP1-208ENST00000537004 LDHBP07195 334 aaKnown RBP14.37□□□□□ -0.11
CLIP1-208ENST00000537004 AACSQ86V21 672 aa14.37□□□□□ -0.11
CLIP1-208ENST00000537004 GPATCH3Q96I76 525 aa14.37□□□□□ -0.11
CLIP1-208ENST00000537004 ZDHHC15Q96MV8 337 aa14.37□□□□□ -0.11
CLIP1-208ENST00000537004 TMEM39BQ9GZU3 492 aa14.37□□□□□ -0.11
CLIP1-208ENST00000537004 HMG20BQ9P0W2 317 aa14.37□□□□□ -0.11
CLIP1-208ENST00000537004 SEMA3EO15041 775 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 HDLBPQ00341 1268 aaKnown RBP14.36□□□□□ -0.11
CLIP1-208ENST00000537004 SPRYD3Q8NCJ5 442 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 CCDC8Q9H0W5 538 aaPredicted RBP14.36□□□□□ -0.11
CLIP1-208ENST00000537004 ECHDC1Q9NTX5 307 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 TSKSQ9UJT2 592 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 SUGT1Q9Y2Z0 365 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 SSC5DA1L4H1 1573 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 NF2P35240 595 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 MCAMP43121 646 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 RABEP1Q15276 862 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 NFKBIBQ15653 356 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 EAF2Q96CJ1 260 aaPredicted RBP14.36□□□□□ -0.11
CLIP1-208ENST00000537004 SNRKQ9NRH2 765 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 DAGLAQ9Y4D2 1042 aa14.36□□□□□ -0.11
CLIP1-208ENST00000537004 MAP2K2P36507 400 aa14.35□□□□□ -0.11
CLIP1-208ENST00000537004 FKBP1BP68106 108 aa14.35□□□□□ -0.11
CLIP1-208ENST00000537004 MAP2K1Q02750 393 aaPredicted RBP14.35□□□□□ -0.11
CLIP1-208ENST00000537004 MKRN3Q13064 507 aaKnown RBP14.35□□□□□ -0.11
CLIP1-208ENST00000537004 HHIPL2Q6UWX4 724 aa14.35□□□□□ -0.11
CLIP1-208ENST00000537004 MRIQ9BWK5 157 aa14.35□□□□□ -0.11
CLIP1-208ENST00000537004 DBNLQ9UJU6 430 aaKnown RBP14.35□□□□□ -0.11
CLIP1-208ENST00000537004 ANGEL1Q9UNK9 670 aaKnown RBP14.35□□□□□ -0.11
CLIP1-208ENST00000537004 SALL1Q9NSC2 1324 aa14.35□□□□□ -0.11
CLIP1-208ENST00000537004 CD2BP2O95400 341 aaKnown RBP14.34□□□□□ -0.11
CLIP1-208ENST00000537004 NOGQ13253 232 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 SPATA5Q8NB90 893 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 ZNF384Q8TF68 577 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 TEPSINQ96N21 525 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 MAST3O60307 1309 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 SLC10A3P09131 477 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 ARID4AP29374 1257 aaPredicted RBP14.34□□□□□ -0.11
CLIP1-208ENST00000537004 KIF23Q02241 960 aaPredicted RBP14.34□□□□□ -0.11
CLIP1-208ENST00000537004 RASAL3Q86YV0 1011 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 CCDC102AQ96A19 550 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 AIDAQ96BJ3 306 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 GPR108Q9NPR9 543 aa14.34□□□□□ -0.11
CLIP1-208ENST00000537004 LBX1P52954 281 aa14.33□□□□□ -0.12
CLIP1-208ENST00000537004 NFIAQ12857 509 aa14.33□□□□□ -0.12
CLIP1-208ENST00000537004 TNFAIP1Q13829 316 aa14.33□□□□□ -0.12
CLIP1-208ENST00000537004 CDC42EP5Q6NZY7 148 aa14.33□□□□□ -0.12
CLIP1-208ENST00000537004 CLMNQ96JQ2 1002 aa14.33□□□□□ -0.12
CLIP1-208ENST00000537004 PPP2R3BQ9Y5P8 575 aa14.33□□□□□ -0.12
CLIP1-208ENST00000537004 NDUFB9Q9Y6M9 179 aa14.33□□□□□ -0.12
CLIP1-208ENST00000537004 ARAP2Q8WZ64 1704 aa14.33□□□□□ -0.12
CLIP1-208ENST00000537004 TCP10Q12799 353 aa14.32□□□□□ -0.12
CLIP1-208ENST00000537004 ARMC9Q7Z3E5 817 aa14.32□□□□□ -0.12
CLIP1-208ENST00000537004 DZIP1Q86YF9 867 aaKnown RBP14.32□□□□□ -0.12
CLIP1-208ENST00000537004 ANO2Q9NQ90 1003 aa14.32□□□□□ -0.12
CLIP1-208ENST00000537004 PAPPA2Q9BXP8 1791 aa14.32□□□□□ -0.12
CLIP1-208ENST00000537004 K7ELQ4 463 aaPredicted RBP14.32□□□□□ -0.12
CLIP1-208ENST00000537004 MECOMQ03112 1051 aa14.32□□□□□ -0.12
CLIP1-208ENST00000537004 SUPT20HL1Q3ZLR7 823 aa14.32□□□□□ -0.12
CLIP1-208ENST00000537004 TTC39AQ5SRH9 613 aa14.32□□□□□ -0.12
CLIP1-208ENST00000537004 LDLRAD1Q5T700 205 aa14.32□□□□□ -0.12
CLIP1-208ENST00000537004 PPP1R12BO60237 982 aaPredicted RBP14.31□□□□□ -0.12
CLIP1-208ENST00000537004 USP2O75604 605 aaPredicted RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms